Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
Predictors | GFP | MS/MS | Papers | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
TraesCS3B01G396500.1 | Wheat | cytosol | 96.86 | 97.22 |
TraesCS3D01G357800.1 | Wheat | cytosol | 95.93 | 96.47 |
Os01t0849100-01 | Rice | cytosol | 81.33 | 80.59 |
EES03886 | Sorghum | cytosol | 80.78 | 80.18 |
HORVU3Hr1G085680.2 | Barley | plastid | 92.79 | 76.88 |
Zm00001d042861_P001 | Maize | cytosol | 78.93 | 74.52 |
GSMUA_Achr9P03750_001 | Banana | cytosol | 56.75 | 65.88 |
TraesCS1A01G280900.2 | Wheat | cytosol | 68.39 | 62.82 |
PGSC0003DMT400067654 | Potato | nucleus | 58.04 | 59.02 |
Solyc08g006550.2.1 | Tomato | nucleus | 57.49 | 58.68 |
AT5G02010.1 | Thale cress | nucleus | 54.9 | 54.4 |
VIT_13s0019g02710.t01 | Wine grape | nucleus | 59.33 | 53.86 |
CDY10476 | Canola | nucleus | 55.45 | 53.57 |
VIT_08s0007g01380.t01 | Wine grape | nucleus | 60.26 | 53.53 |
CDY40325 | Canola | nucleus | 55.27 | 53.39 |
Bra009621.1-P | Field mustard | nucleus | 55.27 | 53.39 |
KRH73109 | Soybean | nucleus | 54.16 | 52.6 |
TraesCS5A01G340900.1 | Wheat | cytosol | 45.29 | 51.26 |
KRH00070 | Soybean | nucleus | 58.04 | 51.22 |
Solyc09g011480.2.1 | Tomato | nucleus | 55.64 | 51.19 |
KRH31060 | Soybean | nucleus | 55.27 | 50.0 |
KRG97804 | Soybean | nucleus | 54.71 | 49.92 |
Bra009152.1-P | Field mustard | cytosol, plastid | 54.34 | 49.41 |
KRH15022 | Soybean | nucleus | 50.65 | 48.84 |
KRH75747 | Soybean | nucleus | 52.68 | 48.72 |
KRH65969 | Soybean | nucleus | 54.16 | 48.51 |
AT5G05940.1 | Thale cress | cytosol | 54.34 | 48.12 |
TraesCS2A01G408100.1 | Wheat | cytosol | 41.59 | 48.08 |
CDY41197 | Canola | cytosol, plastid | 48.61 | 47.47 |
CDY40246 | Canola | cytosol, plastid | 48.61 | 47.22 |
Solyc10g086660.1.1 | Tomato | nucleus | 58.78 | 46.83 |
TraesCS6A01G405000.1 | Wheat | nucleus | 39.56 | 46.83 |
TraesCS1A01G208700.1 | Wheat | nucleus | 41.22 | 46.75 |
AT3G55660.1 | Thale cress | cytosol, plastid | 49.72 | 46.46 |
CDX70109 | Canola | cytosol | 54.34 | 46.45 |
PGSC0003DMT400049230 | Potato | nucleus | 59.33 | 46.39 |
CDX98888 | Canola | cytosol | 54.53 | 46.24 |
Bra007183.1-P | Field mustard | cytosol, plastid | 48.61 | 46.06 |
PGSC0003DMT400005554 | Potato | cytosol, plastid | 55.82 | 45.83 |
Zm00001d047899_P001 | Maize | cytosol | 22.92 | 44.6 |
KRH49210 | Soybean | nucleus, plastid | 58.23 | 44.06 |
TraesCS6A01G196000.1 | Wheat | cytosol | 34.94 | 43.35 |
VIT_08s0007g01390.t01 | Wine grape | nucleus | 47.32 | 43.03 |
Zm00001d023356_P001 | Maize | cytosol | 25.69 | 39.15 |
TraesCS3A01G305500.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 34.01 | 39.15 |
Zm00001d037119_P001 | Maize | plastid | 29.94 | 37.59 |
Zm00001d049679_P001 | Maize | plastid | 29.39 | 35.97 |
TraesCS1A01G392100.1 | Wheat | plastid | 36.41 | 35.12 |
TraesCS6A01G270900.1 | Wheat | cytosol | 33.64 | 33.52 |
TraesCS3A01G270400.1 | Wheat | plastid | 36.97 | 31.8 |
GSMUA_Achr6P14950_001 | Banana | mitochondrion | 52.87 | 21.54 |
Protein Annotations
EnsemblPlants:TraesCS3A01G364400.1 | EnsemblPlantsGene:TraesCS3A01G364400 | Gene3D:1.20.58.1310 | Gene3D:1.20.58.2010 | GO:GO:0003674 | GO:GO:0005089 |
GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR005512 | InterPro:PRONE_dom | InterPro:RopGEF | PANTHER:PTHR33101 |
PANTHER:PTHR33101:SF1 | PFAM:PF03759 | PFscan:PS51334 | SEG:seg | MapMan:27.4.3.1 | : |
Description
No Description!
Coordinates
chr3A:-:613172717..613175858
Molecular Weight (calculated)
59275.7 Da
IEP (calculated)
6.521
GRAVY (calculated)
-0.318
Length
541 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSGEEERGG VSEAAFTDSA DGSSSSSDAA STDDWPALAL AAPKKAPPCS GAPDAEMAGK LKRRGGPETE MMKERFAKLL LGEDMSGSGK GVCTALAIAN
101: AITNLCATIF GQLWRLEPLP PEKAAMWRRE MDWLLCISDH IVELVPTWQS FPDGTRLEIM TSRPRSDLYI NLPALRKLDH MLLEILDSFR DTEFWYVDQG
201: ICAADCDGSA SFRAAFHRRD DKWWLPVPRV PPGGLRDKTR KQLQHKRDCA NQILKAAMAI NSNALAEMDV PESYLDSLPK NGRATLGDVI YRYITSDHFS
301: PECLLDSLDL STEYQALEIA SRVEASVHVW RRRVPAKPAN GLGRTASASA RSWSMVRDML MDSEKRELLA ERAEGLLICL KQRFPALTQT SLDMSKIQYN
401: KDVGKSILES YSRVLESLAS NIVARIDDLL NIDELNRHVE QLSSGEADLK MACGRAVVPP YQQVPAPGTP FVTSYATPSF SPGRLSSPRT SVGAGRRSQG
501: NRAAAAAAKK ALTDHLGPSE VRGMIIVNRS TMVDVSTTTD L
101: AITNLCATIF GQLWRLEPLP PEKAAMWRRE MDWLLCISDH IVELVPTWQS FPDGTRLEIM TSRPRSDLYI NLPALRKLDH MLLEILDSFR DTEFWYVDQG
201: ICAADCDGSA SFRAAFHRRD DKWWLPVPRV PPGGLRDKTR KQLQHKRDCA NQILKAAMAI NSNALAEMDV PESYLDSLPK NGRATLGDVI YRYITSDHFS
301: PECLLDSLDL STEYQALEIA SRVEASVHVW RRRVPAKPAN GLGRTASASA RSWSMVRDML MDSEKRELLA ERAEGLLICL KQRFPALTQT SLDMSKIQYN
401: KDVGKSILES YSRVLESLAS NIVARIDDLL NIDELNRHVE QLSSGEADLK MACGRAVVPP YQQVPAPGTP FVTSYATPSF SPGRLSSPRT SVGAGRRSQG
501: NRAAAAAAKK ALTDHLGPSE VRGMIIVNRS TMVDVSTTTD L
001: MDGSSENLPE VEEKGRESSC CSSETTRQEE EEQSPSCTED FTASPVSSRW SVKNIDGEKK KIRSDSRVSE VEMMKERFSK LLLGEDMSGS GNGVCTALAI
101: SNAITNLCAT LFGQLWRLEP LPTEKKEMWR REMEWLLCVS DHIVEMTPTW QTFPDGTKLE IMTCRPRSDL YVNLPALRKL DNMLLEILDS FEETEFWYVD
201: QGIMAHESAA DGSSSFRKSF QRQEDKWWLP VPRVSPGGLQ ENSRKQLQHK RDCTNQILKA AMAINSITLA DMEIPESYLE SLPRKGRSCL GDLIYRYISS
301: DQFSPECLLD CLDLSSEHQA IEIANRVESS IYLWHKRTNS KPATNTKTSW EMVKELMVDA DKLELMADRA ESLLLSLKQR FPGLPQTALD MSKIQYNKDI
401: GKSILESYSR VLESLAFNIV ARIDDLLFVD DLTRHSSDQI PTTLGNNGND APKSIAVPVS NYTTPSYSPS KQELRSSITV PPSPSRFKIP HSSSVKRVLT
501: AYVTKNEPRL KNLPLERSSR SSSSERLSLE KCMKESLNVS NLDPGI
101: SNAITNLCAT LFGQLWRLEP LPTEKKEMWR REMEWLLCVS DHIVEMTPTW QTFPDGTKLE IMTCRPRSDL YVNLPALRKL DNMLLEILDS FEETEFWYVD
201: QGIMAHESAA DGSSSFRKSF QRQEDKWWLP VPRVSPGGLQ ENSRKQLQHK RDCTNQILKA AMAINSITLA DMEIPESYLE SLPRKGRSCL GDLIYRYISS
301: DQFSPECLLD CLDLSSEHQA IEIANRVESS IYLWHKRTNS KPATNTKTSW EMVKELMVDA DKLELMADRA ESLLLSLKQR FPGLPQTALD MSKIQYNKDI
401: GKSILESYSR VLESLAFNIV ARIDDLLFVD DLTRHSSDQI PTTLGNNGND APKSIAVPVS NYTTPSYSPS KQELRSSITV PPSPSRFKIP HSSSVKRVLT
501: AYVTKNEPRL KNLPLERSSR SSSSERLSLE KCMKESLNVS NLDPGI
Arabidopsis Description
ROPGEF7Rop guanine nucleotide exchange factor 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZN0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.