CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH49210	Soybean	nucleus, plastid	95.43	81.82
VIT_08s0007g01380.t01	Wine grape	nucleus	66.56	67.0
GSMUA_Achr9P03750_001	Banana	cytosol	50.9	66.95
KRH65969	Soybean	nucleus	65.42	66.39
KRH75747	Soybean	nucleus	62.64	65.64
AT5G02010.1	Thale cress	nucleus	57.75	64.84
Solyc09g011480.2.1	Tomato	nucleus	60.2	62.76
CDY40325	Canola	nucleus	56.28	61.61
CDY10476	Canola	nucleus	56.12	61.43
Bra009621.1-P	Field mustard	nucleus	55.79	61.07
Os01t0849100-01	Rice	cytosol	52.69	59.16
KRH73109	Soybean	nucleus	53.67	59.07
EES03886	Sorghum	cytosol	52.2	58.72
TraesCS3D01G357800.1	Wheat	cytosol	51.06	58.18
TraesCS3A01G364400.1	Wheat	nucleus	51.22	58.04
TraesCS3B01G396500.1	Wheat	cytosol	50.73	57.7
KRG97804	Soybean	nucleus	54.65	56.49
PGSC0003DMT400005554	Potato	cytosol, plastid	60.52	56.3
KRH31060	Soybean	nucleus	54.49	55.85
Zm00001d042861_P001	Maize	cytosol	52.04	55.67
Solyc10g086660.1.1	Tomato	nucleus	61.5	55.52
TraesCS1D01G280000.1	Wheat	cytosol	50.41	55.28
KRH15022	Soybean	nucleus	50.57	55.26
PGSC0003DMT400049230	Potato	nucleus	61.99	54.91
TraesCS1B01G289900.1	Wheat	cytosol	50.57	54.77
HORVU1Hr1G072910.3	Barley	cytosol	50.08	54.43
EES18335	Sorghum	cytosol	51.71	54.1
Os05t0454200-01	Rice	nucleus	49.76	53.7
KRH15734	Soybean	cytosol	22.51	53.08
Zm00001d010062_P001	Maize	peroxisome	49.1	52.17
TraesCS1A01G280900.2	Wheat	cytosol	49.27	51.27
VIT_08s0007g01390.t01	Wine grape	nucleus	49.1	50.59
KRH65102	Soybean	nucleus	38.83	49.48
KRH29101	Soybean	cytosol, plastid	45.35	49.12
KRH24128	Soybean	cytosol	45.35	48.94
KRG94270	Soybean	mitochondrion	8.81	48.65
KRH44350	Soybean	nucleus	35.56	48.02
HORVU3Hr1G085680.2	Barley	plastid	50.57	47.47
KRH48179	Soybean	nucleus	28.22	46.13
KRH00737	Soybean	nucleus, plastid	38.5	46.09
KRH40457	Soybean	cytosol	37.68	45.12
KRH39304	Soybean	nucleus	35.56	41.92
KRH09881	Soybean	cytosol	36.38	41.84
KRH23439	Soybean	nucleus	36.38	41.76
KRH47282	Soybean	nucleus	36.54	41.64
KRH48369	Soybean	mitochondrion	36.7	40.04
Zm00001d047899_P001	Maize	cytosol	16.97	37.41
KRH07751	Soybean	cytosol, nucleus, plastid	31.65	34.95
KRH07240	Soybean	cytosol, nucleus, plastid	31.65	34.89
KRH76428	Soybean	mitochondrion, nucleus	31.32	34.1
Zm00001d023356_P001	Maize	cytosol	19.74	34.08
KRH39757	Soybean	mitochondrion, nucleus	30.83	33.57
Zm00001d037119_P001	Maize	plastid	22.68	32.25
Zm00001d049679_P001	Maize	plastid	22.19	30.77
GSMUA_Achr6P14950_001	Banana	mitochondrion	50.24	23.19

Protein Annotations

Gene3D:1.20.58.2010	EntrezGene:100792294	MapMan:27.4.3.1	EMBL:ACUP02011370	EnsemblPlantsGene:GLYMA_18G190100	GO:GO:0003674
GO:GO:0005085	GO:GO:0005089	GO:GO:0005488	GO:GO:0005515	GO:GO:0008150	GO:GO:0065009
UniProt:I1N2P3	InterPro:IPR005512	ProteinID:KRH00069.1	EnsemblPlants:KRH00070	ProteinID:KRH00070	ProteinID:KRH00070.1
PFAM:PF03759	InterPro:PRONE_dom	PFscan:PS51334	PANTHER:PTHR33101	PANTHER:PTHR33101:SF14	InterPro:RopGEF
UniParc:UPI000296200D	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr18:-:45891035..45895659

Molecular Weight (calculated)

67987.9 Da

IEP (calculated)

4.808

GRAVY (calculated)

-0.445

Length

613 amino acids

Sequence
(BLAST)

001: MEGLSLAENS TEAVEESNKG SENGAKRETF ADLIEEKGRE SSFSSEFLSS ETTHEEHSRS STEDSSSSPS VGWPVQEIAA SDCASPHGSE DGEKKHLVLE
101: NKEFEKRVSA SPEIEMMKER FAKLLLGEDM SGCGNGVATA LAISNAITNL CATLFGQLWR LEPLRSEKKA MWRREIEWFL SVSDHIVELT PNWQTFPDGS
201: KLEVMTCRPR SDLYVNLPAL RKLDNMLLEI LDSFVDTEFW YIDQGVLAPD ADGPSSFRQA LQRQEEKWWL PVPRVPPCGL NENSRKQLQH KCDCTNQILK
301: AAMAINSITL EEMDIPESYL ESLPKNARVS LGDVIYRYIT SDHFSPECLL ACLDLSSEHQ AIEIANRAEA SMYIWRKRTN SKPASISARS SSRTSWEMVK
401: DLMVDADKRD LFAERAESLL LSLKQRFPGL PQTALDMSKI QYNKDVGKAI LESYSRVLES LAFNLVARID DVLYVDDLTK NSDKISSLSK VGVVTHKSIS
501: VPHSVPVPGT PYKSAFGTPT LSPAHGISSP AKGGKSPLIN YSNLPQRGSG VKKSLTDFLS IDPKGKDSDT SIEKQDSESN VLDEVTTCET DVESSACTEG
601: AASPSILDWK WHV

Best Arabidopsis Sequence Match ( AT5G02010.1 )
(BLAST)

001: MDGSSENLPE VEEKGRESSC CSSETTRQEE EEQSPSCTED FTASPVSSRW SVKNIDGEKK KIRSDSRVSE VEMMKERFSK LLLGEDMSGS GNGVCTALAI
101: SNAITNLCAT LFGQLWRLEP LPTEKKEMWR REMEWLLCVS DHIVEMTPTW QTFPDGTKLE IMTCRPRSDL YVNLPALRKL DNMLLEILDS FEETEFWYVD
201: QGIMAHESAA DGSSSFRKSF QRQEDKWWLP VPRVSPGGLQ ENSRKQLQHK RDCTNQILKA AMAINSITLA DMEIPESYLE SLPRKGRSCL GDLIYRYISS
301: DQFSPECLLD CLDLSSEHQA IEIANRVESS IYLWHKRTNS KPATNTKTSW EMVKELMVDA DKLELMADRA ESLLLSLKQR FPGLPQTALD MSKIQYNKDI
401: GKSILESYSR VLESLAFNIV ARIDDLLFVD DLTRHSSDQI PTTLGNNGND APKSIAVPVS NYTTPSYSPS KQELRSSITV PPSPSRFKIP HSSSVKRVLT
501: AYVTKNEPRL KNLPLERSSR SSSSERLSLE KCMKESLNVS NLDPGI

Arabidopsis Description

ROPGEF7Rop guanine nucleotide exchange factor 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZN0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.