Factsheet for Solyc09g011480.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400005554	Potato	cytosol, plastid	95.41	85.13
GSMUA_Achr9P03750_001	Banana	cytosol	52.72	66.52
VIT_08s0007g01380.t01	Wine grape	nucleus	68.54	66.17
Solyc10g086660.1.1	Tomato	nucleus	74.15	64.21
AT5G02010.1	Thale cress	nucleus	57.65	62.09
KRH00070	Soybean	nucleus	62.76	60.2
CDY10476	Canola	nucleus	57.31	60.18
Bra009621.1-P	Field mustard	nucleus	56.97	59.82
CDY40325	Canola	nucleus	56.97	59.82
Solyc08g006550.2.1	Tomato	nucleus	53.23	59.06
EES03886	Sorghum	cytosol	53.4	57.61
Os01t0849100-01	Rice	cytosol	53.23	57.33
KRH65969	Soybean	nucleus	57.31	55.79
KRH75747	Soybean	nucleus	55.44	55.73
TraesCS3A01G364400.1	Wheat	nucleus	51.19	55.64
TraesCS3B01G396500.1	Wheat	cytosol	50.68	55.29
TraesCS3D01G357800.1	Wheat	cytosol	50.34	55.02
TraesCS1D01G280000.1	Wheat	cytosol	51.7	54.38
Zm00001d042861_P001	Maize	cytosol	52.89	54.28
HORVU1Hr1G072910.3	Barley	cytosol	52.04	54.26
TraesCS1B01G289900.1	Wheat	cytosol	51.7	53.71
Os05t0454200-01	Rice	nucleus	51.02	52.82
EES18335	Sorghum	cytosol	52.55	52.73
KRH49210	Soybean	nucleus, plastid	62.59	51.47
Zm00001d010062_P001	Maize	peroxisome	50.34	51.3
TraesCS1A01G280900.2	Wheat	cytosol	50.85	50.76
VIT_08s0007g01390.t01	Wine grape	nucleus	50.0	49.41
Solyc01g094610.2.1	Tomato	nucleus	39.46	48.64
Solyc04g082110.2.1	Tomato	nucleus	36.73	47.89
Solyc01g111930.2.1	Tomato	nucleus	46.77	47.66
HORVU3Hr1G085680.2	Barley	plastid	51.36	46.25
Solyc07g032730.2.1	Tomato	nucleus	30.27	43.52
Solyc03g120650.2.1	Tomato	cytosol	35.03	41.04
Solyc06g066650.2.1	Tomato	nucleus	32.14	40.3
Solyc12g044270.1.1	Tomato	nucleus	34.69	38.86
Solyc12g007150.1.1	Tomato	nucleus	34.18	36.22
Zm00001d023356_P001	Maize	cytosol	21.77	36.06
Zm00001d047899_P001	Maize	cytosol	17.01	35.97
Solyc08g075120.2.1	Tomato	extracellular	32.14	33.57
Zm00001d037119_P001	Maize	plastid	23.3	31.79
Zm00001d049679_P001	Maize	plastid	23.3	31.0
Solyc12g096220.1.1	Tomato	nucleus	32.14	25.96
GSMUA_Achr6P14950_001	Banana	mitochondrion	51.36	22.74

Protein Annotations

EnsemblPlants:Solyc09g011480.2.1	EnsemblPlantsGene:Solyc09g011480.2	Gene3D:1.20.58.2010	GO:GO:0003674	GO:GO:0005085	GO:GO:0005089
GO:GO:0005488	GO:GO:0005515	GO:GO:0008150	GO:GO:0065009	InterPro:IPR005512	InterPro:PRONE_dom
InterPro:RopGEF	PANTHER:PTHR33101	PANTHER:PTHR33101:SF14	PFAM:PF03759	PFscan:PS51334	SEG:seg
UniParc:UPI000276B334	UniProt:K4CRH4	MapMan:27.4.3.1	:	:	:

Description

No Description!

Coordinates

chr9:-:4799061..4802508

Molecular Weight (calculated)

66040.1 Da

IEP (calculated)

4.907

GRAVY (calculated)

-0.431

Length

588 amino acids

Sequence
(BLAST)

001: MEVLTEKSDG VEGKVEFCEE NDIKIESFVY EEEGIESSVS SDFLVSEGTV NDEEHSSSED SCSPPSIVWH VQKKASSEGT EQPHVDKRKL EKQGSCLSEV
101: EMMKERFSKL LLGEDMSGCG NGVCTALVIS NAITNLCATL FGQIWRLEPL PSEKRLMWRR EMEWLLCVSD YIVELTPSWQ TFPDGTKLEV MTSRPRLDLY
201: ANLPALRKLD NMLLEILDSF RKTEFWYVDQ GLSAEEADGS SSFRNPLPRQ EDKWWLPVPR VPIDGLSENA KKQLQHKRDC TNQILKAVMA INSNTLADME
301: VPESYVENLP KNGKASLGDL IHRYITSDQF SPECLLECLD LSSEHQALEI ANRVEASIYV WRRRTQAKSS LLRSNSKSSW EMVKDLMIDV DKRDLLADRA
401: ESLLLCLRQR FPGLPQTTLD MSKIQHNKDV GKSILESYSR VLESLAFNIV ARIDDLIYVD NLTKLSDQFV PISKVGIISH KTIGTPISVH ISGSQIKAPF
501: TTPISSSQHI RPAKGDGSQF LDNNVKTSQF GFGVKKMLND YWSVDSNGKD ISNELKRSDS ATASVGSSSS ECSRETVSPS THDSLREA

Best Arabidopsis Sequence Match ( AT5G02010.1 )
(BLAST)

001: MDGSSENLPE VEEKGRESSC CSSETTRQEE EEQSPSCTED FTASPVSSRW SVKNIDGEKK KIRSDSRVSE VEMMKERFSK LLLGEDMSGS GNGVCTALAI
101: SNAITNLCAT LFGQLWRLEP LPTEKKEMWR REMEWLLCVS DHIVEMTPTW QTFPDGTKLE IMTCRPRSDL YVNLPALRKL DNMLLEILDS FEETEFWYVD
201: QGIMAHESAA DGSSSFRKSF QRQEDKWWLP VPRVSPGGLQ ENSRKQLQHK RDCTNQILKA AMAINSITLA DMEIPESYLE SLPRKGRSCL GDLIYRYISS
301: DQFSPECLLD CLDLSSEHQA IEIANRVESS IYLWHKRTNS KPATNTKTSW EMVKELMVDA DKLELMADRA ESLLLSLKQR FPGLPQTALD MSKIQYNKDI
401: GKSILESYSR VLESLAFNIV ARIDDLLFVD DLTRHSSDQI PTTLGNNGND APKSIAVPVS NYTTPSYSPS KQELRSSITV PPSPSRFKIP HSSSVKRVLT
501: AYVTKNEPRL KNLPLERSSR SSSSERLSLE KCMKESLNVS NLDPGI

Arabidopsis Description

ROPGEF7Rop guanine nucleotide exchange factor 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZN0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.