Factsheet for Solyc12g044270.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400097197	Potato	nucleus	95.05	88.63
Solyc06g066650.2.1	Tomato	nucleus	69.14	77.4
Solyc03g120650.2.1	Tomato	cytosol	71.05	74.3
GSMUA_Achr5P06900_001	Banana	cytosol	56.95	71.02
GSMUA_Achr6P14020_001	Banana	cytosol	58.29	71.0
GSMUA_Achr4P10530_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	56.19	68.45
KRH44350	Soybean	nucleus	58.29	67.4
GSMUA_Achr2P09130_001	Banana	cytosol	49.71	66.75
Solyc07g032730.2.1	Tomato	nucleus	50.67	65.04
KRH23439	Soybean	nucleus	65.14	64.04
KRH09881	Soybean	cytosol	64.95	63.98
TraesCS6A01G196000.1	Wheat	cytosol	52.95	63.76
OQU84790	Sorghum	cytosol	52.95	63.18
GSMUA_Achr3P03410_001	Banana	nucleus	60.0	62.25
CDX67930	Canola	nucleus	57.52	62.01
KRH47282	Soybean	nucleus	62.29	60.78
AT1G79860.1	Thale cress	nucleus	58.86	60.0
TraesCSU01G211800.1	Wheat	cytosol	37.14	59.82
Bra003536.1-P	Field mustard	nucleus	58.1	59.45
GSMUA_Achr3P15410_001	Banana	nucleus	56.0	59.27
Zm00001d053307_P002	Maize	cytosol, plastid	54.48	59.21
TraesCSU01G211700.1	Wheat	cytosol	37.9	58.53
TraesCSU01G217800.1	Wheat	cytosol	37.9	58.53
Os02t0272300-01	Rice	plasma membrane	55.81	57.12
CDX79407	Canola	cytosol, endoplasmic reticulum, nucleus	58.1	56.8
TraesCS6D01G183300.1	Wheat	mitochondrion	54.86	56.58
HORVU6Hr1G050860.4	Barley	mitochondrion	53.9	56.26
Solyc12g007150.1.1	Tomato	nucleus	58.48	55.32
Zm00001d016001_P002	Maize	mitochondrion	54.48	53.56
Solyc01g094610.2.1	Tomato	nucleus	35.62	39.2
Solyc04g082110.2.1	Tomato	nucleus	32.95	38.36
Solyc08g006550.2.1	Tomato	nucleus	38.67	38.3
Solyc01g111930.2.1	Tomato	nucleus	40.19	36.57
Solyc09g011480.2.1	Tomato	nucleus	38.86	34.69
Solyc08g075120.2.1	Tomato	extracellular	34.67	32.33
Solyc10g086660.1.1	Tomato	nucleus	38.29	29.6
Solyc12g096220.1.1	Tomato	nucleus	34.29	24.73

Protein Annotations

Gene3D:1.20.58.1310	Gene3D:1.20.58.2010	MapMan:27.4.3.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005085
GO:GO:0005089	GO:GO:0005488	GO:GO:0005515	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016301	GO:GO:0016310	GO:GO:0016740	GO:GO:0065009	InterPro:IPR005512	UniProt:K4DFB5
PFAM:PF03759	InterPro:PRONE_dom	PFscan:PS51334	PANTHER:PTHR33101	PANTHER:PTHR33101:SF10	InterPro:RopGEF
EnsemblPlantsGene:Solyc12g044270.1	EnsemblPlants:Solyc12g044270.1.1	UniParc:UPI00027695B0	:	:	:

Description

No Description!

Coordinates

chr12:-:38717475..38719989

Molecular Weight (calculated)

58832.9 Da

IEP (calculated)

5.037

GRAVY (calculated)

-0.546

Length

525 amino acids

Sequence
(BLAST)

001: MVRAALEEAK EMCKAKLLHF KGKSEDVIIE TSNTSDSGDE LATSKSEDQP VFSRSESVMM RPNETPVVSS PPAKQGPPSD MELMREKFAK LLLGEDMSGG
101: GKGVSSALAL SNAITNLAAS VFGEQKRLEP MPADRKAKWR REIDWLLSVT DHVVEFVPSK QISKDGTSME VMVTKQRNDL QMNVPALRKL DAMLLDCLDS
201: FKDQNEFSYV SKDDESQEGR NDDKWWIPTP KVPKNGLSDV TRKWLQFQKD SVNQVLKAAM AINAQILLEM EIPESYIDSL PKNGRASLGD TIYRSITDEY
301: FDPDYFLTTM DLSSEHKILD LKNKLEASVI IWRRKMTSKD GKSAWGSAVS VEKREIFEDR AETILLILKQ RFPGIPQSSL DISKIQYNED VGQAILESYS
401: RIIESRAHTV MSRIEDVLQV DATAQNPSCA DLKRSPLRDS LRVSPSGSFP NAREEVEKLN AAENPTSMTL LDFMGWTVEQ GDNDTKKDVK EDIDVDAKKP
501: PSIVTNKKLS YLDNIVGARS PTARH

Best Arabidopsis Sequence Match ( AT1G79860.1 )
(BLAST)

001: MVRASEQEQE TYRSRLFNFK WRNNDNNSAT RHNKSLSVET GLDEAATGSH DAEPLTIIHP SQGPPLSRSA ADEAVLAALA ASQARERQLL ADMEQMKERF
101: SKLLLGEDNS GGGKGVSSAL ALSNAITNLA ASVFGEQRRL EPMPAERRAR WRKEIDWLLS VTDYVVEFAP SQQKNKDGTN MEIMTTRQRT DLHMNIPALK
201: KLDAMLIDCL ENFKDQSEFS YISKDSPDLD GKRNDEKWWI PTVKVPPDGL SEASRRFLQY QKDCVNQVLK AAMAINAQVL FEMEIPESYI DSLPKNGRAS
301: LGDQMYKNIT VDFFDPDQFL SSMDMSSEHK IVDLKNRIEA SIIIWKRKMV YKDNKSSAPW ASGVSLEKRE VFEERAETIL LILKQRYPGI SQSSLDISKI
401: QFNEDVGQAV LESYSRILES LAYTVLSRID DVLEADRAGN KRNTPLEAEE ETLVGSMTLS DFMGWDFDQA ANAELESKKD LPDDPLIKEK LSVVTTKKTS
501: YLETLGGVKS PTARH

Arabidopsis Description

ROPGEF12Rop guanine nucleotide exchange factor 12 [Source:UniProtKB/Swiss-Prot;Acc:Q9CA89]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.