Factsheet for Solyc08g075120.2.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 4
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

extracellular: 29876421

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400053650	Potato	cytosol, nucleus, plastid	98.22	98.22
CDY69871	Canola	cytosol	14.21	71.43
KRH39757	Soybean	mitochondrion, nucleus	65.36	65.36
KRH76428	Soybean	mitochondrion, nucleus	64.83	64.83
KRH07751	Soybean	cytosol, nucleus, plastid	62.52	63.42
KRH07240	Soybean	cytosol, nucleus, plastid	61.28	62.05
CDY12411	Canola	cytosol	13.85	60.47
CDX84189	Canola	cytosol	52.04	59.67
Bra005323.1-P	Field mustard	nucleus	52.75	59.28
CDY31706	Canola	cytosol	52.93	59.24
CDY12303	Canola	nucleus	58.97	58.97
CDY62299	Canola	cytosol, nucleus, plastid	58.08	58.39
AT1G31650.1	Thale cress	mitochondrion, nucleus	59.5	58.16
GSMUA_Achr8P14480_001	Banana	nucleus	25.75	55.98
GSMUA_Achr11P...	Banana	cytosol	33.04	55.69
Bra005322.1-P	Field mustard	nucleus	38.54	55.36
KXG30927	Sorghum	cytosol	48.67	50.74
Zm00001d017755_P002	Maize	cytosol	47.96	49.91
Os02t0702600-02	Rice	cytosol	47.96	49.72
Zm00001d051553_P004	Maize	cytosol	47.42	49.44
TraesCS6B01G298000.1	Wheat	cytosol	47.6	49.36
TraesCS6A01G270900.1	Wheat	cytosol	47.25	48.99
TraesCS6D01G244200.1	Wheat	cytosol	47.07	48.8
Solyc12g096220.1.1	Tomato	nucleus	61.1	47.25
GSMUA_Achr8P14490_001	Banana	cytosol	15.99	46.88
GSMUA_Achr11P...	Banana	cytosol	14.92	46.15
HORVU6Hr1G068660.4	Barley	nucleus	43.52	40.5
VIT_02s0087g00460.t01	Wine grape	mitochondrion, nucleus	64.3	39.69
Solyc07g032730.2.1	Tomato	nucleus	28.6	39.36
Solyc01g094610.2.1	Tomato	nucleus	32.33	38.16
Solyc04g082110.2.1	Tomato	nucleus	30.55	38.14
Solyc06g066650.2.1	Tomato	nucleus	31.62	37.95
Solyc03g120650.2.1	Tomato	cytosol	32.33	36.26
Solyc08g006550.2.1	Tomato	nucleus	34.1	36.23
Solyc12g044270.1.1	Tomato	nucleus	32.33	34.67
Solyc01g111930.2.1	Tomato	nucleus	33.75	32.93
HORVU6Hr1G041610.18	Barley	plastid	43.52	32.67
Solyc12g007150.1.1	Tomato	nucleus	32.15	32.61
Solyc09g011480.2.1	Tomato	nucleus	33.57	32.14
Solyc10g086660.1.1	Tomato	nucleus	34.1	28.28

Protein Annotations

EnsemblPlants:Solyc08g075120.2.1	EnsemblPlantsGene:Solyc08g075120.2	Gene3D:1.20.58.2010	GO:GO:0003674	GO:GO:0005085	GO:GO:0005089
GO:GO:0005488	GO:GO:0005515	GO:GO:0008150	GO:GO:0065009	InterPro:IPR005512	InterPro:PRONE_dom
InterPro:RopGEF	ncoils:Coil	PANTHER:PTHR33101	PANTHER:PTHR33101:SF2	PFAM:PF03759	PFscan:PS51334
SEG:seg	UniParc:UPI000276B4EB	UniProt:K4CMN0	MapMan:27.4.3.1	:	:

Description

No Description!

Coordinates

chr8:-:59269856..59276881

Molecular Weight (calculated)

62599.2 Da

IEP (calculated)

6.155

GRAVY (calculated)

-0.437

Length

563 amino acids

Sequence
(BLAST)

001: MVIMRSRLAC CTRDREISID FDENQRITTY DGLESILNSQ PYDNQSVTSR GDGGVTDSLD DDDSSSSSSN NVFGSFSSHW TTMKRDDQGS EEWDFSASPK
101: HYYVKEKPIY TTQFSDLETM KEKFAKLLLG EDVTGGSKGV STALALSNAI TNLAASVFGE LWKLEPLAED GRRKWKREME WLLSPTNHMI ELVPAKQTGS
201: NGQKLEIMVP KARADIHMNL PALQKLDSML LEALDSMVNT EFWYTEVGSR AEGRSRSAGE SKRWWLPSPQ VPIAGLSDPE RNKLLNQGKL VNQIYKAAKA
301: INENVLSEMP VPTIIKDALP KSGRTSLGED LYRILNAEST SMEDMLNFLN VRSEHNALEA VNRLEAAILA WKEKVADHVC GKSPARTSWS FKKDPISELD
401: KIEVLSSRAE ALLQQLKNKY PNLPQTFLNV TKIQYGKDIG CSILEAYSRV LLNLAFSILT RIGEILQEDI LSNPNSPAAS CHLPGIRIAG LTDSPISSRV
501: RHSLIDQMNK TDGRCCDSRR TNASDIDIEF ADSRLSSVTA TPSRRVWCIG RKACSSMSAA NSP

Best Arabidopsis Sequence Match ( AT1G31650.1 )
(BLAST)

001: MMLMRRRLAC CSREREISID FDEHEQDKMI TYYGLETCII NNQSYEEESG TSRGDGCLTD SLDDDAFSSC SSSKDASSSF SSKWLPMKND EHSCDGLNLS
101: GRSQHFDAKE KKKQGYGSSQ HFDAKEKPGY VYCHLDVEAM KEKFSKLLLG EDVTGGCKGV QVALALSNAV THLATSIFGE LWKLEPLCEE KKQKWRREMD
201: WLLSPTNYMI ELVPSKQNDA NGRSLEIMTP KARADIHMNL PALQKLDSML IETLDSMVNT EFWYSEIGSR AEGKNKSTSE SKRWWLPSPQ VPKPGLSNSG
301: RKKLLDKGKV VYQVFKATKA INENILLEMP VPIVIKEAIP KSGKNSLGDE LYKMLAVESA TVDEIFISLN LGTEHAALET VNKLESAMFA WKERITEQGS
401: NGKSPVRASW SFAKDPLSEI GRNESLLNRA EALRTQIKSK HPNLPHSFLD ATKIQYDKDI GHAVLEAYSR TLANLAFRIL SRMGEILKED SLSNPNSPAP
501: PSCFPSSRDP YRTPERPLLS SRVRHSLTDD MNKADGTETG LDFLFADAKA SNSVNTTPSR SSRLWCLSKV PSDTSP

Arabidopsis Description

ROPGEF14Rop guanine nucleotide exchange factor 14 [Source:UniProtKB/Swiss-Prot;Acc:Q56WM6]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.