Factsheet for Bra005323.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra005322.1-P	Field mustard	nucleus	78.24	100.0
CDY31706	Canola	cytosol	99.0	98.61
CDY69871	Canola	cytosol	21.16	94.64
GSMUA_Achr8P14480_001	Banana	nucleus	28.14	54.44
KRH39757	Soybean	mitochondrion, nucleus	59.88	53.29
KRH76428	Soybean	mitochondrion, nucleus	59.68	53.11
Solyc08g075120.2.1	Tomato	extracellular	59.28	52.75
KRH07751	Soybean	cytosol, nucleus, plastid	58.28	52.61
PGSC0003DMT400053650	Potato	cytosol, nucleus, plastid	58.48	52.04
KRH07240	Soybean	cytosol, nucleus, plastid	57.29	51.62
GSMUA_Achr11P...	Banana	cytosol	33.73	50.6
KXG30927	Sorghum	cytosol	47.9	44.44
Os02t0702600-02	Rice	cytosol	47.7	44.01
TraesCS6A01G270900.1	Wheat	cytosol	47.7	44.01
TraesCS6B01G298000.1	Wheat	cytosol	47.7	44.01
TraesCS6D01G244200.1	Wheat	cytosol	47.7	44.01
Zm00001d017755_P002	Maize	cytosol	47.51	43.99
GSMUA_Achr8P14490_001	Banana	cytosol	16.77	43.75
PGSC0003DMT400075550	Potato	extracellular	17.96	43.69
Zm00001d051553_P004	Maize	cytosol	46.71	43.33
Solyc12g096220.1.1	Tomato	nucleus	52.89	36.4
HORVU6Hr1G068660.4	Barley	nucleus	43.11	35.7
Bra020048.1-P	Field mustard	nucleus	33.53	34.01
Bra006510.1-P	Field mustard	cytosol	32.73	33.61
Bra002246.1-P	Field mustard	plastid	34.13	33.08
Bra021162.1-P	Field mustard	nucleus	28.34	32.72
Bra036671.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	32.93	32.67
Bra000971.1-P	Field mustard	nucleus	31.14	32.64
VIT_02s0087g00460.t01	Wine grape	mitochondrion, nucleus	59.28	32.57
Bra037342.1-P	Field mustard	cytosol	30.94	32.49
Bra003536.1-P	Field mustard	nucleus	32.93	32.16
Bra013249.1-P	Field mustard	nucleus, plastid	32.93	31.85
Bra015068.1-P	Field mustard	nucleus	32.14	30.9
Bra004945.1-P	Field mustard	nucleus, plastid	28.34	30.87
Bra015010.1-P	Field mustard	cytosol	33.33	30.53
GSMUA_Achr11P...	Banana	cytosol	10.78	29.67
Bra027189.1-P	Field mustard	nucleus	31.34	29.62
Bra018956.1-P	Field mustard	nucleus	31.14	29.1
HORVU6Hr1G041610.18	Barley	plastid	43.11	28.8
Bra009621.1-P	Field mustard	nucleus	32.14	28.75
Bra030396.1-P	Field mustard	nucleus	30.54	28.49
Bra007183.1-P	Field mustard	cytosol, plastid	31.94	28.02
Bra009152.1-P	Field mustard	cytosol, plastid	33.13	27.9
Bra021161.1-P	Field mustard	nucleus	2.0	7.52

Protein Annotations

Gene3D:1.20.58.2010	MapMan:27.4.3.1	EnsemblPlantsGene:Bra005323	EnsemblPlants:Bra005323.1	EnsemblPlants:Bra005323.1-P	GO:GO:0003674
GO:GO:0005085	GO:GO:0005089	GO:GO:0005488	GO:GO:0005515	GO:GO:0008150	GO:GO:0065009
InterPro:IPR005512	UniProt:M4CM85	PFAM:PF03759	InterPro:PRONE_dom	PFscan:PS51334	PANTHER:PTHR33101
PANTHER:PTHR33101:SF2	InterPro:RopGEF	UniParc:UPI0002547D4F	SEG:seg	:	:

Description

AT1G31650 (E=2e-182) ATROPGEF14, ROPGEF14 | ROPGEF14; Rho guanyl-nucleotide exchange factor

Coordinates

chrA05:-:4825068..4826943

Molecular Weight (calculated)

56595.0 Da

IEP (calculated)

7.054

GRAVY (calculated)

-0.540

Length

501 amino acids

Sequence
(BLAST)

001: MMTYDGLEAC FNNNQSLQEE SGRSRGNECL TDSLDDDAFS SCSSSKDTSE SFSSKWLPKK NGKHISNEWD YERSPKHFYS KEERPGYTLC SSDVEAMKEK
101: FSKLLLGGDL TGGRKGVQTA LALSNAISHL ANSVFGELWK LEPLSEDNKQ RWRREMDWLL SPCSHMIELV PSKLDDKNGR SLEIMTPKPR ADIHMNLPAL
201: RKLDSMLIET LDSMVNTEFW YSEVGPRVEE SRRWWLPSPK VPKPGLSSLV RKNLLEKGNV VYQSFKAAKS INEEVLLEMP VPTIIKDSLP KSGKTSLGDE
301: LFRMLASESA SVDEIFVSLR LRTEHSALET VNRLEAAIYA WKEKFTEQRS SGKWSLVRDS LSEITRIEPL INKAERLNGQ IKSKYSNLPH SFLDATKIQY
401: GKDIGHAILE AYSRILASLA FRILSRIREI LQEDALSNPS SPATPSCFSG SNDLFRTPER LLVSSRLRHS LIHDINKADD GTRNSSDFLN TDPRGSSFSL
501: I

Best Arabidopsis Sequence Match ( AT1G31650.2 )
(BLAST)

001: MITYYGLETC IINNQSYEEE SGTSRGDGCL TDSLDDDAFS SCSSSKDASS SFSSKWLPMK NDEHSCDGLN LSGRSQHFDA KEKKKQGYGS SQHFDAKEKP
101: GYVYCHLDVE AMKEKFSKLL LGEDVTGGCK GVQVALALSN AVTHLATSIF GELWKLEPLC EEKKQKWRRE MDWLLSPTNY MIELVPSKQN DANGRSLEIM
201: TPKARADIHM NLPALQKLDS MLIETLDSMV NTEFWYSEIG SRAEGKNKST SESKRWWLPS PQVPKPGLSN SGRKKLLDKG KVVYQVFKAT KAINENILLE
301: MPVPIVIKEA IPKSGKNSLG DELYKMLAVE SATVDEIFIS LNLGTEHAAL ETVNKLESAM FAWKERITEQ GSNGKSPVRA SWSFAKDPLS EIGRNESLLN
401: RAEALRTQIK SKHPNLPHSF LDATKIQYDK DIGHAVLEAY SRTLANLAFR ILSRMGEILK EDSLSNPNSP APPSCFPSSR DPYRTPERPL LSSRVRHSLT
501: DDMNKADGTE TGLDFLFADA KASNSVNTTP SRSSRLWCLS KVPSDTSP

Arabidopsis Description

ROPGEF14Rop guanine nucleotide exchange factor 14 [Source:UniProtKB/Swiss-Prot;Acc:Q56WM6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.