CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, nucleus, plastid

Predictor Summary:

nucleus 3
mitochondrion 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH07751	Soybean	cytosol, nucleus, plastid	92.99	93.15
KRH76428	Soybean	mitochondrion, nucleus	73.92	73.0
KRH39757	Soybean	mitochondrion, nucleus	72.48	71.58
CDY69871	Canola	cytosol	14.03	69.64
Solyc08g075120.2.1	Tomato	extracellular	62.05	61.28
PGSC0003DMT400053650	Potato	cytosol, nucleus, plastid	61.87	61.1
CDX84189	Canola	cytosol	51.98	58.86
CDY31706	Canola	cytosol	52.16	57.65
GSMUA_Achr8P14480_001	Banana	nucleus	26.8	57.53
Bra005323.1-P	Field mustard	nucleus	51.62	57.29
CDY12303	Canola	nucleus	57.55	56.84
AT1G31650.1	Thale cress	mitochondrion, nucleus	58.81	56.77
CDY12411	Canola	cytosol	13.13	56.59
CDY62299	Canola	cytosol, nucleus, plastid	56.83	56.43
GSMUA_Achr11P...	Banana	cytosol	33.81	56.29
Bra005322.1-P	Field mustard	nucleus	37.59	53.32
KXG30927	Sorghum	cytosol	51.26	52.78
Zm00001d017755_P002	Maize	cytosol	50.54	51.94
Os02t0702600-02	Rice	cytosol	50.72	51.93
Zm00001d051553_P004	Maize	cytosol	50.18	51.67
TraesCS6A01G270900.1	Wheat	cytosol	50.18	51.38
TraesCS6B01G298000.1	Wheat	cytosol	50.18	51.38
TraesCS6D01G244200.1	Wheat	cytosol	49.82	51.01
GSMUA_Achr8P14490_001	Banana	cytosol	17.45	50.52
PGSC0003DMT400075550	Potato	extracellular	17.63	47.57
GSMUA_Achr11P...	Banana	cytosol	15.29	46.7
HORVU6Hr1G068660.4	Barley	nucleus	45.68	41.98
KRH15734	Soybean	cytosol	19.42	41.54
VIT_02s0087g00460.t01	Wine grape	mitochondrion, nucleus	67.27	41.01
KRG94270	Soybean	mitochondrion	7.91	39.64
Solyc12g096220.1.1	Tomato	nucleus	51.62	39.42
KRH44350	Soybean	nucleus	30.58	37.44
KRH65102	Soybean	nucleus	32.37	37.42
KRH48179	Soybean	nucleus	24.46	36.27
KRH09881	Soybean	cytosol	34.17	35.65
KRH23439	Soybean	nucleus	33.81	35.21
KRH73109	Soybean	nucleus	35.07	35.01
KRH40457	Soybean	cytosol	32.19	34.96
KRH00737	Soybean	nucleus, plastid	32.01	34.77
KRH29101	Soybean	cytosol, plastid	35.25	34.63
KRH24128	Soybean	cytosol	34.89	34.15
KRH39304	Soybean	nucleus	31.83	34.04
HORVU6Hr1G041610.18	Barley	plastid	45.68	33.87
KRH31060	Soybean	nucleus	35.61	33.11
KRH47282	Soybean	nucleus	32.01	33.09
KRG97804	Soybean	nucleus	35.25	33.05
KRH15022	Soybean	nucleus	32.91	32.62
KRH75747	Soybean	nucleus	33.63	31.97
KRH48369	Soybean	mitochondrion	32.19	31.85
KRH00070	Soybean	nucleus	34.89	31.65
KRH65969	Soybean	nucleus	34.35	31.62
KRH49210	Soybean	nucleus, plastid	35.43	27.55

Protein Annotations

Gene3D:1.20.58.2010	EntrezGene:100777675	MapMan:27.4.3.1	EMBL:ACUP02009947	ncoils:Coil	EnsemblPlantsGene:GLYMA_16G076100
GO:GO:0003674	GO:GO:0005085	GO:GO:0005089	GO:GO:0005488	GO:GO:0005515	GO:GO:0008150
GO:GO:0065009	UniProt:I1MLY7	InterPro:IPR005512	EnsemblPlants:KRH07240	ProteinID:KRH07240	ProteinID:KRH07240.1
PFAM:PF03759	InterPro:PRONE_dom	PFscan:PS51334	PANTHER:PTHR33101	PANTHER:PTHR33101:SF2	InterPro:RopGEF
UniParc:UPI0002948069	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr16:-:7665425..7672571

Molecular Weight (calculated)

61641.5 Da

IEP (calculated)

5.643

GRAVY (calculated)

-0.369

Length

556 amino acids

Sequence
(BLAST)

001: MSSLMRKRLA CCTKEAKISI DFDEPERIMT YNGLDNCIPD NRSYGDESRT SRGDGCITDS FNDDDDSSSS SSKDAFGSFS SKCFAMKRDE QELEEWEIAE
101: SPQHFYVKDK SAFDVANCSD VEAMKEKFAK LLLGGDVTGG AKGLNTALAL STAITNLAVT VFGELWKLEP LSEERKSKWR REMGWLLSPT NYMVQLVPAK
201: QNGANGGIFE IMTPKARADI QMNLPALQKL DSMLIEALDS MVQTEFWYAE EGSRSAGRNT SGRQSRRWWL PSPRVPRMGL SDIERKRLLN QGRVVQQIFK
301: AAKAINDSML LEMPMPTIIK DALLKSGKAS LGEELHKVLM AESSSGEEML KALNLSSEHT ALETINRLEA ATFSWKERII QENSGKSPVR TSWSFMKDPM
401: AGIDKMELLL ERAETLLSML KARYPNLPQT FLDAAKVQFG KDIGHSILEA YSRVLGSLAF SILSRIADIL QEDSLSNPNT PISASCSPGI NLYEAWVVGS
501: RVRHSLIDKM NEVDGQYCAS SCGSTSDIEF SSTHANASNS VPAMPSRGRL WCIGRG

Best Arabidopsis Sequence Match ( AT1G31650.1 )
(BLAST)

001: MMLMRRRLAC CSREREISID FDEHEQDKMI TYYGLETCII NNQSYEEESG TSRGDGCLTD SLDDDAFSSC SSSKDASSSF SSKWLPMKND EHSCDGLNLS
101: GRSQHFDAKE KKKQGYGSSQ HFDAKEKPGY VYCHLDVEAM KEKFSKLLLG EDVTGGCKGV QVALALSNAV THLATSIFGE LWKLEPLCEE KKQKWRREMD
201: WLLSPTNYMI ELVPSKQNDA NGRSLEIMTP KARADIHMNL PALQKLDSML IETLDSMVNT EFWYSEIGSR AEGKNKSTSE SKRWWLPSPQ VPKPGLSNSG
301: RKKLLDKGKV VYQVFKATKA INENILLEMP VPIVIKEAIP KSGKNSLGDE LYKMLAVESA TVDEIFISLN LGTEHAALET VNKLESAMFA WKERITEQGS
401: NGKSPVRASW SFAKDPLSEI GRNESLLNRA EALRTQIKSK HPNLPHSFLD ATKIQYDKDI GHAVLEAYSR TLANLAFRIL SRMGEILKED SLSNPNSPAP
501: PSCFPSSRDP YRTPERPLLS SRVRHSLTDD MNKADGTETG LDFLFADAKA SNSVNTTPSR SSRLWCLSKV PSDTSP

Arabidopsis Description

ROPGEF14Rop guanine nucleotide exchange factor 14 [Source:UniProtKB/Swiss-Prot;Acc:Q56WM6]
SUBAcon: [nucleus,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.