CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
cytosol 1
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH31060	Soybean	nucleus	95.62	94.82
KRH73109	Soybean	nucleus	74.54	79.35
KRH15022	Soybean	nucleus	71.16	75.22
PGSC0003DMT400067654	Potato	nucleus	62.9	70.11
Solyc08g006550.2.1	Tomato	nucleus	61.89	69.25
GSMUA_Achr9P03750_001	Banana	cytosol	53.96	68.67
VIT_13s0019g02710.t01	Wine grape	nucleus	68.8	68.46
Bra009152.1-P	Field mustard	cytosol, plastid	59.19	58.99
EES03886	Sorghum	cytosol	53.29	57.98
AT5G05940.1	Thale cress	cytosol	58.35	56.63
Os01t0849100-01	Rice	cytosol	51.77	56.23
CDX70109	Canola	cytosol	59.7	55.92
CDX98888	Canola	cytosol	59.36	55.17
TraesCS3B01G396500.1	Wheat	cytosol	50.08	55.1
TraesCS3D01G357800.1	Wheat	cytosol	49.75	54.83
TraesCS3A01G364400.1	Wheat	nucleus	49.92	54.71
KRH00070	Soybean	nucleus	56.49	54.65
KRH15734	Soybean	cytosol	23.95	54.62
Os05t0454200-01	Rice	nucleus	52.11	54.4
TraesCS1D01G280000.1	Wheat	cytosol	51.26	54.38
Zm00001d042861_P001	Maize	cytosol	52.45	54.28
KRH65969	Soybean	nucleus	55.14	54.14
HORVU1Hr1G072910.3	Barley	cytosol	51.1	53.72
TraesCS1B01G289900.1	Wheat	cytosol	51.1	53.53
CDY41197	Canola	cytosol, plastid	49.58	53.07
KRH75747	Soybean	nucleus	52.11	52.82
CDY40246	Canola	cytosol, plastid	49.24	52.42
EES18335	Sorghum	cytosol	51.43	52.05
Zm00001d010062_P001	Maize	peroxisome	50.08	51.47
Bra007183.1-P	Field mustard	cytosol, plastid	49.24	51.14
AT3G55660.1	Thale cress	cytosol, plastid	49.75	50.95
TraesCS1A01G280900.2	Wheat	cytosol	50.42	50.76
KRH65102	Soybean	nucleus	41.15	50.73
KRH48179	Soybean	nucleus	31.03	49.07
KRH24128	Soybean	cytosol	46.04	48.06
KRH29101	Soybean	cytosol, plastid	45.7	47.88
KRH00737	Soybean	nucleus, plastid	40.47	46.88
KRH49210	Soybean	nucleus, plastid	56.16	46.57
KRG94270	Soybean	mitochondrion	8.6	45.95
HORVU3Hr1G085680.2	Barley	plastid	50.25	45.64
KRH40457	Soybean	cytosol	39.29	45.51
KRH44350	Soybean	nucleus	34.23	44.71
KRH39304	Soybean	nucleus	35.24	40.19
KRH09881	Soybean	cytosol	35.92	39.96
KRH23439	Soybean	nucleus	35.75	39.7
KRH47282	Soybean	nucleus	35.92	39.59
KRH48369	Soybean	mitochondrion	35.75	37.72
Zm00001d047899_P001	Maize	cytosol	17.2	36.69
KRH07240	Soybean	cytosol, nucleus, plastid	33.05	35.25
KRH07751	Soybean	cytosol, nucleus, plastid	32.72	34.95
KRH39757	Soybean	mitochondrion, nucleus	32.88	34.64
KRH76428	Soybean	mitochondrion, nucleus	32.72	34.46
Zm00001d023356_P001	Maize	cytosol	19.73	32.96
Zm00001d037119_P001	Maize	plastid	23.95	32.95
Zm00001d049679_P001	Maize	plastid	23.78	31.9
GSMUA_Achr6P14950_001	Banana	mitochondrion	51.94	23.19

Protein Annotations

Gene3D:1.20.58.2010	EntrezGene:100796692	MapMan:27.4.3.1	EMBL:ACUP02010820	EnsemblPlantsGene:GLYMA_18G032100	GO:GO:0003674
GO:GO:0005085	GO:GO:0005089	GO:GO:0005488	GO:GO:0005515	GO:GO:0008150	GO:GO:0065009
InterPro:IPR005512	UniProt:K7MPM9	EnsemblPlants:KRG97804	ProteinID:KRG97804	ProteinID:KRG97804.1	PFAM:PF03759
InterPro:PRONE_dom	PFscan:PS51334	PANTHER:PTHR33101	PANTHER:PTHR33101:SF1	InterPro:RopGEF	UniParc:UPI000233E438
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr18:+:2500360..2504003

Molecular Weight (calculated)

66144.8 Da

IEP (calculated)

8.858

GRAVY (calculated)

-0.449

Length

593 amino acids

Sequence
(BLAST)

001: MDALSKKNEN SQKKRDGVVL SCLTTDSSSE TSFCGSSSSV SAEEAKTKGS SSPAPLGWPI LKATISKRSN SDEKENKHKS HLEDKKFTSI ALKLSEVDMM
101: KERFAKLLLG EDMSGSGKGV CTALAISNAI TNLCATVFGQ LWRLEPLPSE KKEMWQREME WLVSVSDYIV ELMPSWQTYP DGSKLEVMTC RPRADIFTNL
201: PALRKLDNML LGILDSFTAT EFWYVDQGIV APDADGSVSF RKTIQRQEEK WWLPVPRVPP AGLGEDSRKQ LNHSRECANQ ILKAAMAINS IALAEMEVPE
301: SYLEVLPKNG RTCLGDFVYR YITSDQFSPE CLLDCLDISS EHVALEIANR VEAAIYVWRR RAHSRSSPNP NRSTTKSSWE IVKDFMVDGD KRELLADRAE
401: NILVSLKQRF PGLSQTTLDT SKIQCNKDVG KSVLESYSRV LESMAFNIVA RIDDLLYVDD LTKHSERFAL VPTTTVNVVS QQKKVTRPLS VSVSGTTPHK
501: ASVGTPSFSP AAVPLISPAR GERTPFLHNI NINNNNNIKP HRRGFGVRRV LSNYLGVETK TTKICSNSTE VNCSNPSSKK TEQQHQKVKN RTK

Best Arabidopsis Sequence Match ( AT5G05940.1 )
(BLAST)

001: MENLVKSCAG IEKKRSNLTP SMEDILTESK ERSSTSGASY ESSSTTTVAS SSPPPPPSQI LGWPIRKASF RKNSKESVNF DHKKLTLHDD SGFKAKEMNS
101: ADVEMMKERF AKLLLGEDMS GSGKGVCTAL AISNAITNLC ATIFGQLWRL EPLSSEKKEM WRREMEWILS VSDHIVELTP STQTYPDGNK FEVMTCRPRF
201: DLFINLPALR KLDNMLLDIL ASFKKTEFWY VDQGIVASEN DGSASFRRKI QRQEEKWWLP VPRLAPNGLT EEARTELNHK RECATQILKA AMAINSLALT
301: EMDVPKSYLE TLPKNGRSCL GDVIYRYVTS DKFSAESLLD CLDLSSEHIA LDIANRVEAS IYVWRRRVQT KLGVNNNTSS TTPKLTWEMV KELMAAGDKR
401: GLLVERSETL LRCLKQRFPS LTQTSLDISK IQWNKDIGKS ILESYSRALE SLASNIIARI DDLLYVDDLT KQSDDNNLLS SPAVSSIIAH KKVVPLPYLI
501: SASGTPYRTS FSTTPGFSPS MISPKKGERR TPYSSKDTNK IIEKGLPSRG YGVRRVLNNY LGMESKLKIC VNPSDNADTA VINQISKDVE EEKKRNSTSV
601: HQKGPPKYTV S

Arabidopsis Description

ROPGEF5Rop guanine nucleotide exchange factor 5 [Source:UniProtKB/Swiss-Prot;Acc:F4K295]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.