CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
plasma membrane 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d010062_P001	Maize	peroxisome	79.69	80.94
TraesCS1D01G280000.1	Wheat	cytosol	75.43	79.07
TraesCS1B01G289900.1	Wheat	cytosol	76.28	78.98
HORVU1Hr1G072910.3	Barley	cytosol	75.26	78.19
Os05t0454200-01	Rice	nucleus	74.4	76.76
TraesCS1A01G280900.2	Wheat	cytosol	73.55	73.17
EES03886	Sorghum	cytosol	67.58	72.66
GSMUA_Achr9P03750_001	Banana	cytosol	52.9	66.52
Solyc08g006550.2.1	Tomato	nucleus	52.39	57.92
PGSC0003DMT400067654	Potato	nucleus	52.56	57.89
VIT_13s0019g02710.t01	Wine grape	nucleus	56.31	55.37
AT5G02010.1	Thale cress	nucleus	51.37	55.13
CDY40325	Canola	nucleus	52.22	54.64
CDY10476	Canola	nucleus	52.05	54.46
Bra009621.1-P	Field mustard	nucleus	52.05	54.46
VIT_08s0007g01380.t01	Wine grape	nucleus	56.14	54.02
KRH73109	Soybean	nucleus	51.19	53.86
Solyc09g011480.2.1	Tomato	nucleus	52.73	52.55
KRH00070	Soybean	nucleus	54.1	51.71
KRH31060	Soybean	nucleus	52.73	51.67
KRG97804	Soybean	nucleus	52.05	51.43
KRH15022	Soybean	nucleus	48.29	50.45
KRH65969	Soybean	nucleus	51.02	49.5
KRH75747	Soybean	nucleus	49.32	49.4
Bra009152.1-P	Field mustard	cytosol, plastid	50.0	49.24
AT5G05940.1	Thale cress	cytosol	50.85	48.77
EES11256	Sorghum	nucleus	39.08	48.62
Solyc10g086660.1.1	Tomato	nucleus	55.29	47.72
CDY41197	Canola	cytosol, plastid	44.88	47.47
CDY40246	Canola	cytosol, plastid	45.05	47.4
EER99291	Sorghum	nucleus, plastid	45.05	47.23
PGSC0003DMT400049230	Potato	nucleus	55.63	47.11
PGSC0003DMT400005554	Potato	cytosol, plastid	52.56	46.74
EER91970	Sorghum	plastid	38.91	46.63
EER99384	Sorghum	nucleus, plastid	36.69	46.44
CDX70109	Canola	cytosol	50.0	46.29
Bra007183.1-P	Field mustard	cytosol, plastid	45.05	46.23
AT3G55660.1	Thale cress	cytosol, plastid	45.39	45.94
CDX98888	Canola	cytosol	49.83	45.77
KRH49210	Soybean	nucleus, plastid	53.58	43.92
VIT_08s0007g01390.t01	Wine grape	nucleus	44.03	43.36
OQU84790	Sorghum	cytosol	32.08	42.73
OQU87589	Sorghum	nucleus	33.45	37.91
EES19937	Sorghum	mitochondrion	35.15	37.45
KXG33101	Sorghum	mitochondrion	34.47	36.14
KXG30927	Sorghum	cytosol	30.2	32.78
GSMUA_Achr6P14950_001	Banana	mitochondrion	51.54	22.74

Protein Annotations

Gene3D:1.20.58.1310	Gene3D:1.20.58.2010	MapMan:27.4.3.1	EntrezGene:8072532	UniProt:C5YZ67	EnsemblPlants:EES18335
ProteinID:EES18335	ProteinID:EES18335.1	GO:GO:0003674	GO:GO:0005085	GO:GO:0005089	GO:GO:0005488
GO:GO:0005515	GO:GO:0008150	GO:GO:0065009	InterPro:IPR005512	PFAM:PF03759	InterPro:PRONE_dom
PFscan:PS51334	PANTHER:PTHR33101	PANTHER:PTHR33101:SF27	InterPro:RopGEF	EnsemblPlantsGene:SORBI_3009G159600	UniParc:UPI0001A888E6
RefSeq:XP_002439905.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr9:+:51718034..51722569

Molecular Weight (calculated)

63444.0 Da

IEP (calculated)

5.780

GRAVY (calculated)

-0.303

Length

586 amino acids

Sequence
(BLAST)

001: MARGSTGAGE EEEEERAASE ALTADSADEE GRRGSSSSAS SEAASSTVSY TYSPPDEWQQ KVAIKTCVSV VSADVAVAGA GGADDGGNEK KPPRASEMEM
101: MKERFSKLLL GEDMSGSGKG VCTALAISNA ITNLCATIFG QLWRLEPLLP EKKAMWRREM DWLLCVSDHI VELVPTWQTF PDGTRLEIMT SRPRSDLYIN
201: LPALRKLDNM LLEILEGFRD AEFWYVDQGI CAPDCDGSAS YRRTFHRRDD KWWLPVPRVP HGGLCEATRR QVEHRRDCAN QILKAAMAIN SNALAEMDVP
301: DSYLDSLPKN GRATLGDVIY RYITSDHFSP DCLLDCLDLS SEYQALEIAN RVEASVYVWR RRGGGGGHGA AAKPASRAGA KSSWGIVKDM IMDTEKRDLL
401: AERAEGLLIS LKQRFPGLTQ TSLDMSKIQY NKDVGKSILE SYSRVLESLA SNIIARIDDL LSVDELSKQS DSIPSAGVDA KIVCKINSSS SSSSKQAATV
501: VPASGTPYAT AYTTPSFSPA QLSSPSKIGR ALLVDRRSHH VKGPAGATKR TTARSVADRA GVAEVVKGIV VGSAVFDVPT AVTAEM

Best Arabidopsis Sequence Match ( AT5G02010.1 )
(BLAST)

001: MDGSSENLPE VEEKGRESSC CSSETTRQEE EEQSPSCTED FTASPVSSRW SVKNIDGEKK KIRSDSRVSE VEMMKERFSK LLLGEDMSGS GNGVCTALAI
101: SNAITNLCAT LFGQLWRLEP LPTEKKEMWR REMEWLLCVS DHIVEMTPTW QTFPDGTKLE IMTCRPRSDL YVNLPALRKL DNMLLEILDS FEETEFWYVD
201: QGIMAHESAA DGSSSFRKSF QRQEDKWWLP VPRVSPGGLQ ENSRKQLQHK RDCTNQILKA AMAINSITLA DMEIPESYLE SLPRKGRSCL GDLIYRYISS
301: DQFSPECLLD CLDLSSEHQA IEIANRVESS IYLWHKRTNS KPATNTKTSW EMVKELMVDA DKLELMADRA ESLLLSLKQR FPGLPQTALD MSKIQYNKDI
401: GKSILESYSR VLESLAFNIV ARIDDLLFVD DLTRHSSDQI PTTLGNNGND APKSIAVPVS NYTTPSYSPS KQELRSSITV PPSPSRFKIP HSSSVKRVLT
501: AYVTKNEPRL KNLPLERSSR SSSSERLSLE KCMKESLNVS NLDPGI

Arabidopsis Description

ROPGEF7Rop guanine nucleotide exchange factor 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZN0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.