Factsheet for Bra009621.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY40325	Canola	nucleus	98.57	98.57
AT5G02010.1	Thale cress	nucleus	88.93	91.21
GSMUA_Achr9P03750_001	Banana	cytosol	53.39	64.16
VIT_08s0007g01380.t01	Wine grape	nucleus	63.21	58.13
Solyc09g011480.2.1	Tomato	nucleus	59.82	56.97
EES03886	Sorghum	cytosol	54.46	55.96
KRH00070	Soybean	nucleus	61.07	55.79
Os01t0849100-01	Rice	cytosol	54.29	55.68
TraesCS3D01G357800.1	Wheat	cytosol	53.21	55.39
TraesCS3B01G396500.1	Wheat	cytosol	53.21	55.29
TraesCS3A01G364400.1	Wheat	nucleus	53.39	55.27
TraesCS1D01G280000.1	Wheat	cytosol	54.11	54.2
HORVU1Hr1G072910.3	Barley	cytosol	54.46	54.08
TraesCS1B01G289900.1	Wheat	cytosol	54.29	53.71
Zm00001d042861_P001	Maize	cytosol	54.29	53.05
Os05t0454200-01	Rice	nucleus	53.75	52.99
KRH75747	Soybean	nucleus	55.0	52.65
KRH65969	Soybean	nucleus	56.79	52.65
EES18335	Sorghum	cytosol	54.46	52.05
Zm00001d010062_P001	Maize	peroxisome	52.68	51.13
Solyc10g086660.1.1	Tomato	nucleus	61.79	50.96
PGSC0003DMT400005554	Potato	cytosol, plastid	59.82	50.83
TraesCS1A01G280900.2	Wheat	cytosol	53.21	50.59
PGSC0003DMT400049230	Potato	nucleus	62.5	50.58
Bra009152.1-P	Field mustard	cytosol, plastid	52.86	49.75
Bra000971.1-P	Field mustard	nucleus	41.96	49.16
Bra037342.1-P	Field mustard	cytosol	41.07	48.22
KRH49210	Soybean	nucleus, plastid	60.89	47.69
Bra007183.1-P	Field mustard	cytosol, plastid	48.21	47.29
Bra015010.1-P	Field mustard	cytosol	45.89	46.98
HORVU3Hr1G085680.2	Barley	plastid	53.75	46.09
VIT_08s0007g01390.t01	Wine grape	nucleus	48.93	46.05
Bra004945.1-P	Field mustard	nucleus, plastid	37.68	45.87
Bra021162.1-P	Field mustard	nucleus	31.96	41.24
Bra030396.1-P	Field mustard	nucleus	37.14	38.73
Bra036671.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	34.64	38.42
Bra003536.1-P	Field mustard	nucleus	35.0	38.21
Bra027189.1-P	Field mustard	nucleus	35.89	37.92
Bra018956.1-P	Field mustard	nucleus	36.07	37.69
Bra020048.1-P	Field mustard	nucleus	32.5	36.84
Bra013249.1-P	Field mustard	nucleus, plastid	33.93	36.68
Bra015068.1-P	Field mustard	nucleus	33.93	36.47
Bra006510.1-P	Field mustard	cytosol	31.43	36.07
Zm00001d047899_P001	Maize	cytosol	17.68	35.61
Bra002246.1-P	Field mustard	plastid	31.61	34.24
Zm00001d023356_P001	Maize	cytosol	21.07	33.24
Bra005323.1-P	Field mustard	nucleus	28.75	32.14
Zm00001d037119_P001	Maize	plastid	23.75	30.86
Zm00001d049679_P001	Maize	plastid	23.93	30.32
Bra005322.1-P	Field mustard	nucleus	19.64	28.06
GSMUA_Achr6P14950_001	Banana	mitochondrion	53.75	22.67
Bra021161.1-P	Field mustard	nucleus	2.14	9.02

Protein Annotations

Gene3D:1.20.58.2010	MapMan:27.4.3.1	EnsemblPlantsGene:Bra009621	EnsemblPlants:Bra009621.1	EnsemblPlants:Bra009621.1-P	GO:GO:0003674
GO:GO:0005085	GO:GO:0005089	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005886	GO:GO:0008150	GO:GO:0016020
GO:GO:0065009	InterPro:IPR005512	UniProt:M4CZH4	PFAM:PF03759	InterPro:PRONE_dom	PFscan:PS51334
PANTHER:PTHR33101	PANTHER:PTHR33101:SF14	InterPro:RopGEF	UniParc:UPI0002547E12	SEG:seg	:

Description

AT5G02010 (E=5e-258) ATROPGEF7, ROPGEF7 | ROPGEF7; Rho guanyl-nucleotide exchange factor

Coordinates

chrA10:-:17469516..17471749

Molecular Weight (calculated)

63442.3 Da

IEP (calculated)

5.510

GRAVY (calculated)

-0.552

Length

560 amino acids

Sequence
(BLAST)

001: MGASPEKLRI DMREAEEKRR ESSCCSSSDF PISETIRREE EEEQRPSTTE DFTASPLSSR WSVKNVDDGG DKKIRPKQSR VSEIEMMKER FSKLLLGEDM
101: SGSGNGVCTA LAISNAITNL CATLFGQLWR LEPLPKEKKD MWRREMEWLL CVSDHIVEMT PTWQTFPDGT KLEIMTCRPR SDLYVNLPAL RKLDNMLLEI
201: LDSFEETEFW YVDQGIVAHE SAADGSSSFR KSFQRQEDKW WLPVPRVSPG GLQENSRKQL QHKRDCTNQI LKAAMAINSI TLADMEIPES YLESLPRRGR
301: SCLGDLIYRY ISSDQFSPEY LLDCLDLSSE HQAIEIANRV ESSIYLWHKR SNSKPATNTK TSWEMVKELM VDGEKLEVMA DRAESLLISL KQRFPGLPQT
401: ALDMSKIQYN KDIGKSILES YSRVLESLAF NIVARIDDLL FVDDLTRHSS DQIPTTLGNN GSDAVKNNAL TATTYTTPSY SPAKAELGTS VTTVPPSPSR
501: FKIPHSSSVK RVLTAYVTKN EPRLKDIQVE RSSRSSSSER LSLEKCMKES LNVSNLDPGI

Best Arabidopsis Sequence Match ( AT5G02010.1 )
(BLAST)

001: MDGSSENLPE VEEKGRESSC CSSETTRQEE EEQSPSCTED FTASPVSSRW SVKNIDGEKK KIRSDSRVSE VEMMKERFSK LLLGEDMSGS GNGVCTALAI
101: SNAITNLCAT LFGQLWRLEP LPTEKKEMWR REMEWLLCVS DHIVEMTPTW QTFPDGTKLE IMTCRPRSDL YVNLPALRKL DNMLLEILDS FEETEFWYVD
201: QGIMAHESAA DGSSSFRKSF QRQEDKWWLP VPRVSPGGLQ ENSRKQLQHK RDCTNQILKA AMAINSITLA DMEIPESYLE SLPRKGRSCL GDLIYRYISS
301: DQFSPECLLD CLDLSSEHQA IEIANRVESS IYLWHKRTNS KPATNTKTSW EMVKELMVDA DKLELMADRA ESLLLSLKQR FPGLPQTALD MSKIQYNKDI
401: GKSILESYSR VLESLAFNIV ARIDDLLFVD DLTRHSSDQI PTTLGNNGND APKSIAVPVS NYTTPSYSPS KQELRSSITV PPSPSRFKIP HSSSVKRVLT
501: AYVTKNEPRL KNLPLERSSR SSSSERLSLE KCMKESLNVS NLDPGI

Arabidopsis Description

ROPGEF7Rop guanine nucleotide exchange factor 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZN0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.