Factsheet for TraesCS1D01G280000.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G289900.1	Wheat	cytosol	98.39	97.17
HORVU1Hr1G072910.3	Barley	cytosol	93.74	92.91
TraesCS1A01G280900.2	Wheat	cytosol	93.2	88.45
EES18335	Sorghum	cytosol	79.07	75.43
Os05t0454200-01	Rice	nucleus	75.85	74.65
Zm00001d010062_P001	Maize	peroxisome	74.24	71.92
TraesCS3D01G357800.1	Wheat	cytosol	67.62	70.26
GSMUA_Achr9P03750_001	Banana	cytosol	53.31	63.95
Solyc08g006550.2.1	Tomato	nucleus	53.85	56.79
PGSC0003DMT400067654	Potato	nucleus	54.02	56.77
AT5G02010.1	Thale cress	nucleus	53.85	55.13
VIT_13s0019g02710.t01	Wine grape	nucleus	58.32	54.7
CDY10476	Canola	nucleus	54.2	54.11
Bra009621.1-P	Field mustard	nucleus	54.2	54.11
CDY40325	Canola	nucleus	54.02	53.93
VIT_08s0007g01380.t01	Wine grape	nucleus	58.14	53.37
KRH73109	Soybean	nucleus	52.59	52.78
TraesCS5D01G346100.1	Wheat	cytosol	45.26	52.27
Solyc09g011480.2.1	Tomato	nucleus	54.38	51.7
KRG97804	Soybean	nucleus	54.38	51.26
KRH31060	Soybean	nucleus	54.74	51.17
KRH00070	Soybean	nucleus	55.28	50.41
KRH15022	Soybean	nucleus	50.27	50.09
Bra009152.1-P	Field mustard	cytosol, plastid	53.31	50.08
KRH65969	Soybean	nucleus	53.13	49.17
KRH75747	Soybean	nucleus	51.16	48.89
AT5G05940.1	Thale cress	cytosol	53.13	48.61
Solyc10g086660.1.1	Tomato	nucleus	57.6	47.42
TraesCS2D01G405400.1	Wheat	nucleus	39.71	47.23
CDX70109	Canola	cytosol	53.31	47.08
CDY40246	Canola	cytosol, plastid	46.87	47.04
CDY41197	Canola	cytosol, plastid	46.51	46.93
PGSC0003DMT400049230	Potato	nucleus	57.96	46.82
CDX98888	Canola	cytosol	53.31	46.71
PGSC0003DMT400005554	Potato	cytosol, plastid	54.74	46.43
TraesCS6D01G388300.1	Wheat	nucleus	38.64	46.25
Bra007183.1-P	Field mustard	cytosol, plastid	46.87	45.88
TraesCS1D01G211900.1	Wheat	nucleus	39.0	45.7
AT3G55660.1	Thale cress	cytosol, plastid	47.05	45.42
VIT_08s0007g01390.t01	Wine grape	nucleus	46.33	43.53
KRH49210	Soybean	nucleus, plastid	55.46	43.36
TraesCS3D01G296400.1	Wheat	cytosol	33.27	40.26
TraesCS3D01G270200.1	Wheat	plastid	34.88	37.64
TraesCS6D01G183300.1	Wheat	mitochondrion	33.45	36.74
TraesCS1D01G400200.2	Wheat	plastid	36.14	35.75
TraesCS6D01G244200.1	Wheat	cytosol	31.66	32.6
GSMUA_Achr6P14950_001	Banana	mitochondrion	53.85	22.67

Protein Annotations

EnsemblPlants:TraesCS1D01G280000.1	EnsemblPlantsGene:TraesCS1D01G280000	Gene3D:1.20.58.2010	GO:GO:0003674	GO:GO:0005089	GO:GO:0005488
GO:GO:0005515	InterPro:IPR005512	InterPro:PRONE_dom	InterPro:RopGEF	PANTHER:PTHR33101	PANTHER:PTHR33101:SF27
PFAM:PF03759	PFscan:PS51334	SEG:seg	MapMan:27.4.3.1	:	:

Description

No Description!

Coordinates

chr1D:+:377973552..377976584

Molecular Weight (calculated)

61381.0 Da

IEP (calculated)

5.259

GRAVY (calculated)

-0.400

Length

559 amino acids

Sequence
(BLAST)

001: MARGGGGAAE EEEEEEEEGM AVSETLTAES EECLRGSSSS ASSVAASTDS YCPPDEWQQV AMKTCVTDDA MGKAKPPAPG KESPPVAEPE RHRAPEVELM
101: KERFSKLLLG EDMSGSGKGV CTALAISNAI TNLCATIFGQ LWRLEPLLPE KKAMWRREMD WLLCVSDHIV ELVPTWQTFP DGTRLEIMTS RPRSDLYINL
201: PALRKLDHML LETLESFRDT EFWYVDQGIC APDCDGSASF RRPAHRRDEK WWLPVPRVPP GGLREATRRQ LEHKRDAANQ ILKAAMAINS NALAEMDVPD
301: SYHDSLPKNG RATLGDIIYR YITSEQFSPD CLLDCLDLSS EYQAVEIANR VEAAVYVWRR RGTAAKSAGT KSSWGMVKDM IMDTEKRGDL LAERAEGLLI
401: SLKQRFPGLT QTSLDMSKIQ YNKDVGKSIL ESYSRVMESL ASNIIARIDD LLYVDELSKQ ADQKLPSGVA DDGKIACKNK KAAAMAAVPA SGTTYVTPSF
501: SPAQLSSPSK IGRALLVDRR AHHGRAAKRS ALADHGGGPE VKGMLVTSPV FDAPLGTEL

Best Arabidopsis Sequence Match ( AT5G02010.1 )
(BLAST)

001: MDGSSENLPE VEEKGRESSC CSSETTRQEE EEQSPSCTED FTASPVSSRW SVKNIDGEKK KIRSDSRVSE VEMMKERFSK LLLGEDMSGS GNGVCTALAI
101: SNAITNLCAT LFGQLWRLEP LPTEKKEMWR REMEWLLCVS DHIVEMTPTW QTFPDGTKLE IMTCRPRSDL YVNLPALRKL DNMLLEILDS FEETEFWYVD
201: QGIMAHESAA DGSSSFRKSF QRQEDKWWLP VPRVSPGGLQ ENSRKQLQHK RDCTNQILKA AMAINSITLA DMEIPESYLE SLPRKGRSCL GDLIYRYISS
301: DQFSPECLLD CLDLSSEHQA IEIANRVESS IYLWHKRTNS KPATNTKTSW EMVKELMVDA DKLELMADRA ESLLLSLKQR FPGLPQTALD MSKIQYNKDI
401: GKSILESYSR VLESLAFNIV ARIDDLLFVD DLTRHSSDQI PTTLGNNGND APKSIAVPVS NYTTPSYSPS KQELRSSITV PPSPSRFKIP HSSSVKRVLT
501: AYVTKNEPRL KNLPLERSSR SSSSERLSLE KCMKESLNVS NLDPGI

Arabidopsis Description

ROPGEF7Rop guanine nucleotide exchange factor 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZN0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.