Factsheet for TraesCS6D01G183300.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

cytosol 1
mitochondrion 3
plastid 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
MultiLoc:	cytosol
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G196000.1	Wheat	cytosol	85.27	99.54
TraesCSU01G211800.1	Wheat	cytosol	63.26	98.77
TraesCSU01G217800.1	Wheat	cytosol	64.24	96.18
TraesCSU01G211700.1	Wheat	cytosol	64.24	96.18
OQU84790	Sorghum	cytosol	78.19	90.45
HORVU6Hr1G050860.4	Barley	mitochondrion	89.19	90.26
Os02t0272300-01	Rice	plasma membrane	89.98	89.28
Zm00001d053307_P002	Maize	cytosol, plastid	83.69	88.2
Zm00001d016001_P002	Maize	mitochondrion	84.68	80.71
GSMUA_Achr6P14020_001	Banana	cytosol	56.78	67.05
GSMUA_Achr3P03410_001	Banana	nucleus	62.28	62.65
Solyc07g032730.2.1	Tomato	nucleus	50.1	62.35
Solyc06g066650.2.1	Tomato	nucleus	56.58	61.41
PGSC0003DMT400042632	Potato	nucleus	55.6	60.47
KRH44350	Soybean	nucleus	53.05	59.47
TraesCS3D01G296400.1	Wheat	cytosol	52.06	57.36
PGSC0003DMT400006531	Potato	cytosol	55.21	55.98
Solyc03g120650.2.1	Tomato	cytosol	55.01	55.78
Solyc12g044270.1.1	Tomato	nucleus	56.58	54.86
KRH09881	Soybean	cytosol	56.78	54.22
KRH23439	Soybean	nucleus	56.78	54.12
PGSC0003DMT400040374	Potato	nucleus	49.9	54.04
Bra020048.1-P	Field mustard	nucleus	52.06	53.64
CDY44926	Canola	nucleus	52.06	53.64
CDY42277	Canola	nucleus	51.87	53.44
AT5G19560.4	Thale cress	mitochondrion	53.05	52.73
KRH39304	Soybean	nucleus	53.83	52.69
Bra006510.1-P	Field mustard	cytosol	50.1	52.25
CDX88884	Canola	cytosol, plastid	50.1	52.25
KRH47282	Soybean	nucleus	55.01	52.04
TraesCS3D01G270200.1	Wheat	plastid	52.65	51.74
PGSC0003DMT400001020	Potato	nucleus	56.19	51.53
KRH48369	Soybean	mitochondrion	56.78	51.42
CDY58963	Canola	cytosol	37.52	51.34
PGSC0003DMT400097197	Potato	nucleus	56.78	51.33
Solyc12g007150.1.1	Tomato	nucleus	55.8	51.17
CDX92519	Canola	plastid	49.71	50.91
CDX70882	Canola	cytosol	50.29	50.69
VIT_11s0016g03740.t01	Wine grape	nucleus	54.42	49.91
Bra002246.1-P	Field mustard	plastid	49.71	48.94
TraesCS1D01G400200.2	Wheat	plastid	52.46	47.26
TraesCS5D01G346100.1	Wheat	cytosol	38.7	40.7
TraesCS1D01G211900.1	Wheat	nucleus	34.97	37.32
TraesCS2D01G405400.1	Wheat	nucleus	33.99	36.81
TraesCS6D01G388300.1	Wheat	nucleus	33.2	36.19
TraesCS3D01G357800.1	Wheat	cytosol	37.92	35.87
TraesCS1D01G280000.1	Wheat	cytosol	36.74	33.45
TraesCS6D01G244200.1	Wheat	cytosol	32.22	30.2

Protein Annotations

EnsemblPlants:TraesCS6D01G183300.1	EnsemblPlantsGene:TraesCS6D01G183300	Gene3D:1.20.58.1310	Gene3D:1.20.58.2010	GO:GO:0003674	GO:GO:0005089
GO:GO:0005488	GO:GO:0005515	InterPro:IPR005512	InterPro:PRONE_dom	InterPro:RopGEF	PANTHER:PTHR33101
PANTHER:PTHR33101:SF16	PFAM:PF03759	PFscan:PS51334	SEG:seg	MapMan:27.4.3.1	:

Description

No Description!

Coordinates

chr6D:+:220293672..220296290

Molecular Weight (calculated)

57272.1 Da

IEP (calculated)

5.361

GRAVY (calculated)

-0.573

Length

509 amino acids

Sequence
(BLAST)

001: MVRFLRRHSL DKSNSHTHLR KEEQESNSCT ESDTAEMQEP GGNGGGGAPP LPNGRTAPRS RLARDGPPSD LDVMKERFAK LLLGEDMSGT GKGVPSALAL
101: SNAITNLAAS VFGEHRKLEP MAPDTKERWK KEVGWLLSVT DHIVEFVPTR QTAENGTTME IMSTAQRRDL QMNIPALRKL DAMLIGYMDN FVDQTEFWYE
201: KGGDNKRDDD KWWMPTVKVP AEGLSDVTRK WLQYQKECVN QVLKAAMAIN AQVLVEMEIP EIYIESLPKK GKTSLGDAIY RSITDEEFDP IEFLEGVDLS
301: TEHKVLDLKN RIEASTIIWK RKMQTKDAKS SWGSIISFEK REQFEERAET ILHLLKLQFP GAPQSQLDIS KIQYNRDVGY ALLESYSRVL ESLAYSVISR
401: IEDVLGADAA ATNLTASEAA RRQLEMNAPR KLDAREELEK LNEAPASMTL YDFMGWHFDQ DELMRKKEEG TLDEAGEAML LKKAPSLAPK KFSYVDSLAG
501: GVRSPSARH

Best Arabidopsis Sequence Match ( AT1G52240.1 )
(BLAST)

001: MVKAMEQEQE TYKSRLFHFK NMNENSASRH VKSWSSDCAM RMDGSDNLDD DDNDMMMFRS QPGKCGSVDR PSLPIGGVTP NRNDKLPRVS SSDSMEALII
101: LQAAMEQMKE KFSKLLLGED MSGGGKGVSS ALALSNAITN LAASAFGEQR RLEPMAVDRK TRWRREIGWL ISVADYIVEF APTQQTNKDG TSMEVMSTRQ
201: RTDLLCNIPA LKKLDAMLLD CLDKFKDQDE FYYVKKDSPD SCETRNDEKW WLPAVKVPPN GLSEISRRFL QSQKECVNQV LKAAMAINAQ VLSEMEIPES
301: YLESLPKNGR ASLGDVIYRM ITVEMFDADQ FLIEMDLSSE HKILDLKNRI EASIVIWKRK MVQKDTKSPW GSTVSIEKRE QFEERAETIL LLLKQGFPGI
401: SQSSLDISKI QFNRDVGLAI LESYSRVLES LAHTVMSRIE DVLYADQLTQ EPTNNAPSKN RYSLKENEKL REERLSFTED MASGTLSDVM QWGNKNNEMK
501: KESFFGDREK PLLSKVTGIM TNNKKSSYLD NLGAMRSPTA RYS

Arabidopsis Description

ROPGEF11ROPGEF11 [Source:UniProtKB/TrEMBL;Acc:A0A178W8V0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.