Factsheet for GSMUA_Achr6P14020_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P06900_001	Banana	cytosol	77.73	79.57
GSMUA_Achr4P10530_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	74.71	74.71
GSMUA_Achr2P09130_001	Banana	cytosol	66.36	73.15
GSMUA_Achr3P03410_001	Banana	nucleus	84.92	72.33
Solyc07g032730.2.1	Tomato	nucleus	63.11	66.5
TraesCS6A01G196000.1	Wheat	cytosol	67.05	66.28
OQU84790	Sorghum	cytosol	66.36	65.0
KRH44350	Soybean	nucleus	68.45	64.98
Solyc06g066650.2.1	Tomato	nucleus	69.37	63.75
GSMUA_Achr3P15410_001	Banana	nucleus	71.93	62.5
TraesCSU01G211800.1	Wheat	cytosol	47.1	62.27
PGSC0003DMT400042632	Potato	nucleus	67.52	62.18
TraesCSU01G217800.1	Wheat	cytosol	48.03	60.88
TraesCSU01G211700.1	Wheat	cytosol	48.03	60.88
Zm00001d053307_P002	Maize	cytosol, plastid	67.29	60.04
Solyc03g120650.2.1	Tomato	cytosol	69.37	59.56
PGSC0003DMT400006531	Potato	cytosol	69.14	59.36
Solyc12g044270.1.1	Tomato	nucleus	71.0	58.29
HORVU6Hr1G050860.4	Barley	mitochondrion	67.75	58.05
TraesCS6D01G183300.1	Wheat	mitochondrion	67.05	56.78
Os02t0272300-01	Rice	plasma membrane	67.52	56.73
KRH09881	Soybean	cytosol	69.14	55.91
KRH23439	Soybean	nucleus	69.14	55.81
KRH39304	Soybean	nucleus	66.36	55.0
PGSC0003DMT400040374	Potato	nucleus	59.4	54.47
Zm00001d016001_P002	Maize	mitochondrion	67.05	54.12
KRH47282	Soybean	nucleus	67.52	54.09
VIT_11s0016g03740.t01	Wine grape	nucleus	69.61	54.05
PGSC0003DMT400097197	Potato	nucleus	70.53	54.0
Solyc12g007150.1.1	Tomato	nucleus	69.37	53.87
KRH48369	Soybean	mitochondrion	70.07	53.74
PGSC0003DMT400001020	Potato	nucleus	69.14	53.69
Bra020048.1-P	Field mustard	nucleus	60.56	52.83
CDY44926	Canola	nucleus	60.56	52.83
CDY58963	Canola	cytosol	45.48	52.69
CDY42277	Canola	nucleus	60.09	52.43
Bra006510.1-P	Field mustard	cytosol	58.0	51.23
CDX88884	Canola	cytosol, plastid	58.0	51.23
AT5G19560.4	Thale cress	mitochondrion	60.56	50.98
CDX92519	Canola	plastid	58.47	50.7
CDX70882	Canola	cytosol	58.0	49.51
Bra002246.1-P	Field mustard	plastid	58.47	48.74
GSMUA_Achr9P03750_001	Banana	cytosol	47.1	43.56
GSMUA_Achr5P20570_001	Banana	nucleus	43.39	38.8
GSMUA_Achr2P03580_001	Banana	nucleus	45.01	38.26
GSMUA_Achr8P14490_001	Banana	cytosol	16.71	37.5
GSMUA_Achr1P18140_001	Banana	nucleus	46.64	36.35
GSMUA_Achr10P...	Banana	cytosol	43.39	36.1
GSMUA_Achr3P14650_001	Banana	nucleus	46.64	35.39
GSMUA_Achr8P14480_001	Banana	nucleus	20.42	33.98
GSMUA_Achr11P...	Banana	cytosol	24.59	31.74
GSMUA_Achr11P...	Banana	cytosol	12.06	28.57
GSMUA_Achr6P14950_001	Banana	mitochondrion	47.1	15.29

Protein Annotations

EnsemblPlants:GSMUA_Achr6P14020_001	EnsemblPlants:GSMUA_Achr6T14020_001	EnsemblPlantsGene:GSMUA_Achr6G14020_001	Gene3D:1.20.58.1310	Gene3D:1.20.58.2010	GO:GO:0003674
GO:GO:0005085	GO:GO:0005089	GO:GO:0005488	GO:GO:0005515	GO:GO:0008150	GO:GO:0065009
InterPro:IPR005512	InterPro:PRONE_dom	InterPro:RopGEF	PANTHER:PTHR33101	PANTHER:PTHR33101:SF10	PFAM:PF03759
PFscan:PS51334	SEG:seg	UniParc:UPI000294E07F	UniProt:M0T6V0	MapMan:27.4.3.1	:

Description

Rop guanine nucleotide exchange factor 1 [Source:GMGC_GENE;Acc:GSMUA_Achr6G14020_001]

Coordinates

chr6:-:9277793..9280280

Molecular Weight (calculated)

49112.1 Da

IEP (calculated)

5.870

GRAVY (calculated)

-0.492

Length

431 amino acids

Sequence
(BLAST)

001: MELMKEKFSK LLLGEDMSGG GKGVSSALAL SNAITNLAAS VFSEQRRLEP MPAERKARWR KEIDWLLSVT DHIVEFVPSQ QTSKDGSNME IMITKQRKDL
101: LMNIPALGKL DAMLIGYLDN FKGQNEFWYV SKDADESEKS NAKRNEDKWW LPIVKVPSNG LSEVSRKWLQ FQKESINQVL KAAMAINAQV LMEMEIPEAY
201: IESLPKNGRA SLGDSIYRSI TDDGFDPEEF LESMDLSTEH KVLDLKNRIE ASIIIWIRKM HNKDTKSSWG SAVSMEKREQ FEERAEIILH LLKLRFPGIP
301: QSALDTSKIQ YSKDVGQSIL ESYSRILESL AFTVMSQIED VLYADSLTQD PSLKDSSRRQ LLTDSDLGAV KKLNPEEEME KLKEAPSSMT LSDFMDMKKM
401: KKPPDVVTTK KLSYIEKLEN LRCLRSPTAR H

Best Arabidopsis Sequence Match ( AT3G24620.1 )
(BLAST)

001: MVAALERGLS ASKSFNFKRM FDSSSTKQQQ SQTIVVENGD SHIVESNTPE SQNSDSFVES PVESSLPMIS PLTRPGKRSE RQQADMEMMK DRFAKLLLGE
101: DMSGGGKGVS SALALSNAIT NLAASIFGEQ TKLQPMPQDR QARWKKEIDW LLSVTDHIVE FVPSQQTSKD GVCTEIMVTR QRGDLLMNIP ALRKLDAMLI
201: DTLDNFRGHN EFWYVSRDSE EGQQARNDRT NDKWWLPPVK VPPGGLSEPS RRMLYFQKDS VTQVQKAAMA INAQVLSEME IPESYIDSLP KNGRASLGDS
301: IYKSITEEWF DPEQFLAMLD MSTEHKVLDL KNRIEASVVI WKRKLHTKDT KSSWGSAVSL EKRELFEERA ETILVLLKQK FPGLPQSSLD ISKIQFNKDV
401: GQAVLESYSR ILESLAYTVM SRIEDVLYTD TLALKQTLLA EETSDGGRTT ETDSESAGSS NSGEEAEKHD PHSKTLLDFM GWNDNSSKGG DKPTKSPNLT
501: PKKLSYLEKL ENLNGFRSPK DRH

Arabidopsis Description

ROPGEF8Rho guanine nucleotide exchange factor 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9LV40]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.