Factsheet for GSMUA_Achr4P10530_001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, endoplasmic reticulum, vacuole, plastid, cytosol, plasma membrane, golgi, nucleus

Predictor Summary:

nucleus 3
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid, secretory
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P14020_001	Banana	cytosol	74.71	74.71
GSMUA_Achr5P06900_001	Banana	cytosol	72.85	74.58
GSMUA_Achr2P09130_001	Banana	cytosol	67.52	74.42
Solyc07g032730.2.1	Tomato	nucleus	63.11	66.5
GSMUA_Achr3P15410_001	Banana	nucleus	73.09	63.51
KRH44350	Soybean	nucleus	65.43	62.11
GSMUA_Achr3P03410_001	Banana	nucleus	71.93	61.26
Solyc06g066650.2.1	Tomato	nucleus	66.13	60.77
PGSC0003DMT400042632	Potato	nucleus	64.5	59.4
PGSC0003DMT400006531	Potato	cytosol	67.75	58.17
Solyc03g120650.2.1	Tomato	cytosol	67.05	57.57
Solyc12g044270.1.1	Tomato	nucleus	68.45	56.19
KRH23439	Soybean	nucleus	67.75	54.68
CDY58963	Canola	cytosol	46.87	54.3
KRH09881	Soybean	cytosol	66.82	54.03
PGSC0003DMT400040374	Potato	nucleus	56.84	52.13
KRH39304	Soybean	nucleus	62.88	52.12
KRH48369	Soybean	mitochondrion	67.29	51.6
PGSC0003DMT400001020	Potato	nucleus	66.36	51.53
Solyc12g007150.1.1	Tomato	nucleus	66.36	51.53
KRH47282	Soybean	nucleus	64.27	51.49
PGSC0003DMT400097197	Potato	nucleus	67.05	51.33
CDY44926	Canola	nucleus	58.7	51.21
Bra020048.1-P	Field mustard	nucleus	58.7	51.21
VIT_11s0016g03740.t01	Wine grape	nucleus	65.66	50.99
CDY42277	Canola	nucleus	58.24	50.81
Bra006510.1-P	Field mustard	cytosol	56.61	50.0
CDX92519	Canola	plastid	57.31	49.7
CDX88884	Canola	cytosol, plastid	56.15	49.59
AT5G19560.4	Thale cress	mitochondrion	58.47	49.22
CDX70882	Canola	cytosol	56.38	48.12
Bra002246.1-P	Field mustard	plastid	57.31	47.78
GSMUA_Achr9P03750_001	Banana	cytosol	44.32	40.99
GSMUA_Achr8P14490_001	Banana	cytosol	16.94	38.02
GSMUA_Achr5P20570_001	Banana	nucleus	39.68	35.48
GSMUA_Achr2P03580_001	Banana	nucleus	41.53	35.31
GSMUA_Achr10P...	Banana	cytosol	41.76	34.75
GSMUA_Achr1P18140_001	Banana	nucleus	43.62	34.0
GSMUA_Achr3P14650_001	Banana	nucleus	43.62	33.1
GSMUA_Achr8P14480_001	Banana	nucleus	18.56	30.89
GSMUA_Achr11P...	Banana	cytosol	21.81	28.14
GSMUA_Achr11P...	Banana	cytosol	11.6	27.47
GSMUA_Achr6P14950_001	Banana	mitochondrion	44.08	14.31

Protein Annotations

EnsemblPlants:GSMUA_Achr4P10530_001	EnsemblPlants:GSMUA_Achr4T10530_001	EnsemblPlantsGene:GSMUA_Achr4G10530_001	Gene3D:1.20.58.1310	Gene3D:1.20.58.2010	GO:GO:0003674
GO:GO:0005085	GO:GO:0005089	GO:GO:0005488	GO:GO:0005515	GO:GO:0008150	GO:GO:0065009
InterPro:IPR005512	InterPro:PRONE_dom	InterPro:RopGEF	PANTHER:PTHR33101	PANTHER:PTHR33101:SF10	PFAM:PF03759
PFscan:PS51334	UniParc:UPI000296E2DC	UniProt:M0SMS0	MapMan:27.4.3.1	:	:

Description

Rop guanine nucleotide exchange factor 1 [Source:GMGC_GENE;Acc:GSMUA_Achr4G10530_001]

Coordinates

chr4:-:7653557..7656256

Molecular Weight (calculated)

49237.8 Da

IEP (calculated)

6.297

GRAVY (calculated)

-0.504

Length

431 amino acids

Sequence
(BLAST)

001: MSGGGIGVSS ALALSNAITN LAASVFGEQW RLEPMSAERK ARWRREINWL LSVTDHIVQF VPSQQISKDG TSMEIMVTQQ RKDLLMNIPA LRKLDAMLIE
101: YLDNFKDQNE FWYVSRDADE SEKGNARRTD DKWWLPTVRV PPDGLSDVSR KWLQYQKELV NQVLKAAMAI NANVLTEMEI PESYIESLPK KNNFALWSSV
201: SSVLPCQFQN GRASLGDSLY RNITDDDFDP EEFLSSVDLS TEHKILDLKN RIEASVIIWK RKMHNKDGKS AWGSAVSMEK REQFEERAET ILLILKHRFP
301: GIPQSDLDIN KIQYNKDVGH SILESYSRVI ESLAFTVMSR IEDVLYADSV SQDATGGSSR RRPSLTDSEP IKPLDPKEEI EKLNKIEANN LMTLQDFMGK
401: WMRKLPNLVT NKKFLEKIEN LGGLRSPTAR H

Best Arabidopsis Sequence Match ( AT3G24620.1 )
(BLAST)

001: MVAALERGLS ASKSFNFKRM FDSSSTKQQQ SQTIVVENGD SHIVESNTPE SQNSDSFVES PVESSLPMIS PLTRPGKRSE RQQADMEMMK DRFAKLLLGE
101: DMSGGGKGVS SALALSNAIT NLAASIFGEQ TKLQPMPQDR QARWKKEIDW LLSVTDHIVE FVPSQQTSKD GVCTEIMVTR QRGDLLMNIP ALRKLDAMLI
201: DTLDNFRGHN EFWYVSRDSE EGQQARNDRT NDKWWLPPVK VPPGGLSEPS RRMLYFQKDS VTQVQKAAMA INAQVLSEME IPESYIDSLP KNGRASLGDS
301: IYKSITEEWF DPEQFLAMLD MSTEHKVLDL KNRIEASVVI WKRKLHTKDT KSSWGSAVSL EKRELFEERA ETILVLLKQK FPGLPQSSLD ISKIQFNKDV
401: GQAVLESYSR ILESLAYTVM SRIEDVLYTD TLALKQTLLA EETSDGGRTT ETDSESAGSS NSGEEAEKHD PHSKTLLDFM GWNDNSSKGG DKPTKSPNLT
501: PKKLSYLEKL ENLNGFRSPK DRH

Arabidopsis Description

ROPGEF8Rho guanine nucleotide exchange factor 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9LV40]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.