Factsheet for PGSC0003DMT400097197

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g044270.1.1	Tomato	nucleus	88.63	95.05
PGSC0003DMT400042632	Potato	nucleus	63.41	76.28
PGSC0003DMT400006531	Potato	cytosol	66.61	74.7
GSMUA_Achr6P14020_001	Banana	cytosol	54.0	70.53
GSMUA_Achr5P06900_001	Banana	cytosol	52.58	70.31
KRH44350	Soybean	nucleus	54.88	68.06
GSMUA_Achr4P10530_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	51.33	67.05
GSMUA_Achr2P09130_001	Banana	cytosol	45.83	65.98
KRH09881	Soybean	cytosol	61.81	65.29
KRH23439	Soybean	nucleus	61.63	64.98
TraesCS6A01G196000.1	Wheat	cytosol	49.38	63.76
OQU84790	Sorghum	cytosol	49.38	63.18
GSMUA_Achr3P03410_001	Banana	nucleus	56.31	62.65
CDX67930	Canola	nucleus	53.82	62.22
KRH47282	Soybean	nucleus	59.33	62.08
AT1G79860.1	Thale cress	nucleus	55.06	60.19
TraesCSU01G211800.1	Wheat	cytosol	34.64	59.82
Zm00001d053307_P002	Maize	cytosol, plastid	51.15	59.63
GSMUA_Achr3P15410_001	Banana	nucleus	52.4	59.48
Bra003536.1-P	Field mustard	nucleus	54.0	59.26
TraesCSU01G217800.1	Wheat	cytosol	35.17	58.24
TraesCSU01G211700.1	Wheat	cytosol	35.17	58.24
PGSC0003DMT400040374	Potato	nucleus	48.49	58.09
Os02t0272300-01	Rice	plasma membrane	52.04	57.12
CDX79407	Canola	cytosol, endoplasmic reticulum, nucleus	54.35	56.98
TraesCS6D01G183300.1	Wheat	mitochondrion	51.33	56.78
HORVU6Hr1G050860.4	Barley	mitochondrion	50.27	56.26
PGSC0003DMT400001020	Potato	nucleus	55.24	56.04
Zm00001d016001_P002	Maize	mitochondrion	51.51	54.31
PGSC0003DMT400000136	Potato	nucleus	33.04	38.99
PGSC0003DMT400067654	Potato	nucleus	36.41	38.53
PGSC0003DMT400047997	Potato	nucleus	37.3	36.4
PGSC0003DMT400025800	Potato	nucleus	34.1	34.97
PGSC0003DMT400053650	Potato	cytosol, nucleus, plastid	31.62	31.62
PGSC0003DMT400005554	Potato	cytosol, plastid	36.41	31.11
PGSC0003DMT400049230	Potato	nucleus	36.06	29.34
PGSC0003DMT400075550	Potato	extracellular	9.59	26.21

Protein Annotations

EnsemblPlants:PGSC0003DMT400097197	EnsemblPlantsGene:PGSC0003DMG400046768	Gene3D:1.20.58.1310	Gene3D:1.20.58.2010	GO:GO:0003674	GO:GO:0005085
GO:GO:0005089	GO:GO:0005488	GO:GO:0005515	GO:GO:0008150	GO:GO:0065009	InterPro:IPR005512
InterPro:PRONE_dom	InterPro:RopGEF	PANTHER:PTHR33101	PANTHER:PTHR33101:SF10	PFAM:PF03759	PFscan:PS51334
PGSC:PGSC0003DMG400046768	SEG:seg	UniParc:UPI000296E4AB	UniProt:M1E040	MapMan:27.4.3.1	:

Description

Pollen-specific kinase partner protein [Source:PGSC_GENE;Acc:PGSC0003DMG400046768]

Coordinates

chr12:+:50617568..50620292

Molecular Weight (calculated)

63109.7 Da

IEP (calculated)

5.636

GRAVY (calculated)

-0.589

Length

563 amino acids

Sequence
(BLAST)

001: MVRAALEEAK EMCKAKLLHF KGKSEDGTGQ ETKIVTIETS NSSDSGDESK SEDQPVDSQK TGCVLSRSES IKLRLANETP VVSSPRPKQC PPSGNTSSNF
101: VHLSYYSWRT NYLHCHNNME LMKEKFAKLL LGEDMSGGGK GVSSALALSN AITNLAASAF GEQKRLEPMP ADRKAKWRRE IDWLLSVTDH VVEFVPSKQI
201: SKDGTCMEVM VTKQRNDLQM NVPALRKLDA MLLDCLDSFK DQNEFSYVSK DDESQEGRND DKWWIPTPKV PTNGLSDVTR KWLQFQKDSV NQVLKAAMAI
301: NAQILLEMEI PESYIDSLPK NGRASLGDTI YRSITDEYFD PDYFLTTMDL TSEHKILDLK NKLEASVIIW RRKMTSKDGK SAWGSAVSVE KREIFEDRAE
401: TILLILKQRF PGIPQSSLDI SKIQYNEDVG QAVLESYSRI IESRAHTVMS RIEDVLQVDA TAQNPSCAEM KKSPLRDSLR VSPSGSFPNA REEVEKLNAA
501: ENPTSMTLLD FMGWTVEQGD NDTKKDVKED IDADAKKPPS VVTNKKLSYL DNLVGARSPT ARH

Best Arabidopsis Sequence Match ( AT1G79860.1 )
(BLAST)

001: MVRASEQEQE TYRSRLFNFK WRNNDNNSAT RHNKSLSVET GLDEAATGSH DAEPLTIIHP SQGPPLSRSA ADEAVLAALA ASQARERQLL ADMEQMKERF
101: SKLLLGEDNS GGGKGVSSAL ALSNAITNLA ASVFGEQRRL EPMPAERRAR WRKEIDWLLS VTDYVVEFAP SQQKNKDGTN MEIMTTRQRT DLHMNIPALK
201: KLDAMLIDCL ENFKDQSEFS YISKDSPDLD GKRNDEKWWI PTVKVPPDGL SEASRRFLQY QKDCVNQVLK AAMAINAQVL FEMEIPESYI DSLPKNGRAS
301: LGDQMYKNIT VDFFDPDQFL SSMDMSSEHK IVDLKNRIEA SIIIWKRKMV YKDNKSSAPW ASGVSLEKRE VFEERAETIL LILKQRYPGI SQSSLDISKI
401: QFNEDVGQAV LESYSRILES LAYTVLSRID DVLEADRAGN KRNTPLEAEE ETLVGSMTLS DFMGWDFDQA ANAELESKKD LPDDPLIKEK LSVVTTKKTS
501: YLETLGGVKS PTARH

Arabidopsis Description

ROPGEF12Rop guanine nucleotide exchange factor 12 [Source:UniProtKB/Swiss-Prot;Acc:Q9CA89]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.