CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, nucleus, cytosol

Predictor Summary:

nucleus 2
endoplasmic reticulum 2
extracellular 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, endoplasmic reticulum, nucleus
Any Predictor:	endoplasmic reticulum, nucleus
BaCelLo:	nucleus
MultiLoc:	endoplasmic reticulum
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX67930	Canola	nucleus	85.85	94.66
AT1G79860.1	Thale cress	nucleus	81.38	84.85
KRH44350	Soybean	nucleus	56.98	67.4
KRH09881	Soybean	cytosol	62.76	63.23
KRH23439	Soybean	nucleus	62.2	62.55
Solyc06g066650.2.1	Tomato	nucleus	53.82	61.62
KRH47282	Soybean	nucleus	60.89	60.78
PGSC0003DMT400042632	Potato	nucleus	52.89	60.68
CDY45633	Canola	nucleus	58.1	59.66
Solyc03g120650.2.1	Tomato	cytosol	54.56	58.37
PGSC0003DMT400006531	Potato	cytosol	54.38	58.17
Solyc12g044270.1.1	Tomato	nucleus	56.8	58.1
CDY46477	Canola	nucleus	55.12	56.81
CDX77402	Canola	nucleus	55.12	56.81
CDY03296	Canola	nucleus	34.64	56.19
CDX87879	Canola	nucleus	58.1	56.01
CDY03297	Canola	mitochondrion	53.63	55.07
CDY39783	Canola	mitochondrion	53.63	54.86
PGSC0003DMT400097197	Potato	nucleus	56.98	54.35
CDX97723	Canola	nucleus	51.02	51.5
CDY67259	Canola	nucleus	57.17	51.08
CDY58963	Canola	cytosol	35.38	51.08
CDY52982	Canola	nucleus	56.98	50.92
CDY42277	Canola	nucleus	46.74	50.81
CDY44926	Canola	nucleus	46.74	50.81
CDY30136	Canola	nucleus	50.84	49.64
CDX88884	Canola	cytosol, plastid	44.88	49.39
CDX92519	Canola	plastid	45.25	48.89
CDX70882	Canola	cytosol	44.88	47.72
CDY28381	Canola	nucleus	51.58	46.24
CDY20181	Canola	nucleus	51.21	45.3
CDX93028	Canola	nucleus	39.29	44.51
CDY69871	Canola	cytosol	8.94	42.86
CDX74772	Canola	nucleus, plastid	33.15	39.56
CDY18892	Canola	nucleus	32.96	39.16
CDY57376	Canola	cytosol, extracellular, nucleus	5.4	38.67
CDY70620	Canola	nucleus	33.52	38.38
CDY07216	Canola	cytosol	33.89	38.32
CDY51157	Canola	nucleus	32.4	38.24
CDX77457	Canola	cytosol	36.87	36.2
CDX85176	Canola	cytosol	36.69	36.01
CDY10476	Canola	nucleus	36.69	35.18
CDY40325	Canola	nucleus	36.69	35.18
CDY12411	Canola	cytosol	8.19	34.11
CDY41197	Canola	cytosol, plastid	35.01	33.94
CDY40246	Canola	cytosol, plastid	35.2	33.93
CDY31706	Canola	cytosol	30.35	32.41
CDX84189	Canola	cytosol	29.61	32.38
CDX70109	Canola	cytosol	37.06	31.44
CDX98888	Canola	cytosol	37.06	31.19
CDY62299	Canola	cytosol, nucleus, plastid	31.28	30.0
CDY12303	Canola	nucleus	31.28	29.84
CDX91908	Canola	cytosol	33.71	27.63

Protein Annotations

EnsemblPlants:CDX79407	EnsemblPlantsGene:GSBRNA2T00132123001	Gene3D:1.20.58.2010	GO:A0A078CRN6	GO:GO:0003674	GO:GO:0005089
GO:GO:0005488	GO:GO:0005515	InterPro:IPR005512	InterPro:PRONE_dom	InterPro:RopGEF	PANTHER:PTHR33101
PANTHER:PTHR33101:SF10	PFAM:PF03759	PFscan:PS51334	ProteinID:CDX79407	ProteinID:CDX79407.1	SEG:seg
TMHMM:TMhelix	UniParc:UPI0004EE4A64	MapMan:27.4.3.1	:	:	:

Description

BnaC06g18960D

Coordinates

chrLK031817:+:1979503..1982299

Molecular Weight (calculated)

60644.1 Da

IEP (calculated)

5.782

GRAVY (calculated)

-0.497

Length

537 amino acids

Sequence
(BLAST)

001: MVRASEQEQE SYRSKLFNFK WRNNDNNAGK QSNSPVSKPG LDEAAAGSQE VEPLTIIHPN KSPLVSRPSA DDAALAAAQA REKQLLAGIY LSIFSLLFFD
101: NLKLHMHIYL MLFSLLMKER FSKLLLGEDN SGGGKGVCSA LALSNAITNL AASVFGEQRR LEPMPADRRA RWRREIDWLL SVTDYVVEFA PSQQKNKDGT
201: TMEIMTTRQR NDLHMNIPAL RKLDAMLIDC LDNFKDQSEF GYVSKDSPDS DNTKGHDEKW WIPKVKVPPD GLSEASRRFL QYQKDCVNQV LKAAMAINAQ
301: VLFEMEIPES YIDSLPKNGR ASLGDQMYKN ITVEFFDPDQ FLNSMDMSSE HKILDLKNKI EASIIIWKRK MVQKDNKPSA PWASGVSLEK REVFEERAET
401: ILLILKHRYP GISQSSLDIS KIQFSKDVGQ SVLESYSRIL ESLAYTVLSR INDVLDADRA VSKRSTPMEP EEETLVGSMT LSDFMGWDFD QGNEDLDSKK
501: DTSSDDKLVK EKLNVVTTKK TSYLETLGGV NSPTARH

Best Arabidopsis Sequence Match ( AT1G79860.1 )
(BLAST)

001: MVRASEQEQE TYRSRLFNFK WRNNDNNSAT RHNKSLSVET GLDEAATGSH DAEPLTIIHP SQGPPLSRSA ADEAVLAALA ASQARERQLL ADMEQMKERF
101: SKLLLGEDNS GGGKGVSSAL ALSNAITNLA ASVFGEQRRL EPMPAERRAR WRKEIDWLLS VTDYVVEFAP SQQKNKDGTN MEIMTTRQRT DLHMNIPALK
201: KLDAMLIDCL ENFKDQSEFS YISKDSPDLD GKRNDEKWWI PTVKVPPDGL SEASRRFLQY QKDCVNQVLK AAMAINAQVL FEMEIPESYI DSLPKNGRAS
301: LGDQMYKNIT VDFFDPDQFL SSMDMSSEHK IVDLKNRIEA SIIIWKRKMV YKDNKSSAPW ASGVSLEKRE VFEERAETIL LILKQRYPGI SQSSLDISKI
401: QFNEDVGQAV LESYSRILES LAYTVLSRID DVLEADRAGN KRNTPLEAEE ETLVGSMTLS DFMGWDFDQA ANAELESKKD LPDDPLIKEK LSVVTTKKTS
501: YLETLGGVKS PTARH

Arabidopsis Description

ROPGEF12Rop guanine nucleotide exchange factor 12 [Source:UniProtKB/Swiss-Prot;Acc:Q9CA89]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.