Skip to main content
crop-pal logo
Canola
Search for another protein from :
Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 3
  • cytosol 1
  • mitochondrion 2
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
CDY00332
CDY30738
CDY45748
CDY56740
CDY68200

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G24620.1 CDY00332 AT5G62880.1 22500990
AT3G24620.1 CDY30738 AT5G62880.1 22500990
AT3G24620.1 CDY45748 AT5G62880.1 22500990
AT3G24620.1 CDY56740 AT5G62880.1 22500990
AT3G24620.1 CDY68200 AT5G62880.1 22500990
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX77402 Canola nucleus 99.23 99.23
AT3G24620.1 Thale cress nucleus 92.13 91.78
CDY03297 Canola mitochondrion 91.17 90.82
CDY39783 Canola mitochondrion 91.17 90.48
CDY03296 Canola nucleus 56.62 89.12
CDX93028 Canola nucleus 66.22 72.78
Solyc07g032730.2.1 Tomato nucleus 50.48 64.3
VIT_09s0002g04310.t01 Wine grape cytosol 54.89 63.0
CDX67930 Canola nucleus 55.47 59.34
KRH39304 Soybean nucleus 57.58 57.69
KRH48369 Soybean mitochondrion 61.23 56.76
CDY44926 Canola nucleus 52.78 55.67
PGSC0003DMT400040374 Potato nucleus 49.9 55.32
CDX79407 Canola cytosol, endoplasmic reticulum, nucleus 56.81 55.12
CDY42277 Canola nucleus 52.21 55.06
CDX88884 Canola cytosol, plastid 51.44 54.92
PGSC0003DMT400001020 Potato nucleus 57.58 54.05
CDY58963 Canola cytosol 38.58 54.03
CDY45633 Canola nucleus 53.74 53.54
Solyc12g007150.1.1 Tomato nucleus 57.01 53.51
CDX70882 Canola cytosol 51.63 53.27
CDX92519 Canola plastid 50.29 52.72
CDX87879 Canola nucleus 53.74 50.27
CDX97723 Canola nucleus 50.29 49.25
CDY30136 Canola nucleus 50.1 47.45
CDY67259 Canola nucleus 54.13 46.92
CDY52982 Canola nucleus 53.93 46.76
CDY28381 Canola nucleus 51.06 44.41
CDY20181 Canola nucleus 50.86 43.66
CDY69871 Canola cytosol 9.21 42.86
CDY57376 Canola cytosol, extracellular, nucleus 5.95 41.33
CDX74772 Canola nucleus, plastid 35.12 40.67
CDY18892 Canola nucleus 35.12 40.49
CDY07216 Canola cytosol 35.32 38.74
CDY51157 Canola nucleus 33.78 38.68
CDY70620 Canola nucleus 34.74 38.59
CDX77457 Canola cytosol 38.96 37.11
CDX85176 Canola cytosol 38.58 36.75
CDY12411 Canola cytosol 8.83 35.66
CDY40246 Canola cytosol, plastid 37.43 35.01
CDY41197 Canola cytosol, plastid 37.04 34.84
CDY40325 Canola nucleus 36.85 34.29
CDY10476 Canola nucleus 36.85 34.29
CDX84189 Canola cytosol 30.52 32.38
CDY31706 Canola cytosol 31.09 32.21
CDX70109 Canola cytosol 38.96 32.07
CDX98888 Canola cytosol 38.58 31.5
CDY62299 Canola cytosol, nucleus, plastid 33.01 30.71
CDY12303 Canola nucleus 32.44 30.02
CDX91908 Canola cytosol 34.74 27.63
Protein Annotations
Gene3D:1.20.58.2010MapMan:27.4.3.1GO:A0A078I8R3UniProt:A0A078I8R3EnsemblPlants:CDY46477ProteinID:CDY46477
ProteinID:CDY46477.1GO:GO:0003674GO:GO:0005085GO:GO:0005089GO:GO:0005488GO:GO:0005515
GO:GO:0008150GO:GO:0065009EnsemblPlantsGene:GSBRNA2T00084067001InterPro:IPR005512PFAM:PF03759InterPro:PRONE_dom
PFscan:PS51334PANTHER:PTHR33101PANTHER:PTHR33101:SF10InterPro:RopGEFUniParc:UPI0004EBBDDDSEG:seg
Description
BnaC07g03890DBnaC07g03890D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I8R3]
Coordinates
chrLK032669:+:95055..97372
Molecular Weight (calculated)
58233.9 Da
IEP (calculated)
5.810
GRAVY (calculated)
-0.580
Length
521 amino acids
Sequence
(BLAST)
001: MVAALERGLS ASKSFNFKRM FESSSKKHQQ PQTIVIENGD SHLVESNTPE SQNSDSLSES PVESIPPMIS PLNRPGKRPD RQQADTEMLK DRFAKLLLGE
101: DMSGGGKGVS SALALSNAIT NLAASIFGEQ TKLQPMPQDR QARWKKEIDW LLSVTDHIVE FVPSQQTSKD GVCTEIMVTR QRGDLLMNIP ALRKLDAMLI
201: DTLDNFKGHN EFYYVSRDSE EGKQASNARS NDKWWLPPVK VPPGGLSEPA RRMLYFQKDS VTQVQKAAMA INAQVLSEMA IPESYIDSLP KNGRASLGDS
301: IYKSITEEWF DPEQFLSMLD MSTEHKVLDL KNKIEASVVI WKRKLHVKDS KSSWGSAVSL EKRELFEERA ETILVLLKQK FPGLPQSSLD ISKIQFNKDV
401: GQAVLESYSR ILESLAYTVM SRIEDVLYTD SLTLKETLLA EEASDGGRTT ETDSESAGSS NSGEETEKLD PRYSKTLLDF MGWSDNSSKS SDKPTKSPGL
501: TPKKFSYLEN LNGFRSPKAR H
Best Arabidopsis Sequence Match ( AT3G24620.1 )
(BLAST)
001: MVAALERGLS ASKSFNFKRM FDSSSTKQQQ SQTIVVENGD SHIVESNTPE SQNSDSFVES PVESSLPMIS PLTRPGKRSE RQQADMEMMK DRFAKLLLGE
101: DMSGGGKGVS SALALSNAIT NLAASIFGEQ TKLQPMPQDR QARWKKEIDW LLSVTDHIVE FVPSQQTSKD GVCTEIMVTR QRGDLLMNIP ALRKLDAMLI
201: DTLDNFRGHN EFWYVSRDSE EGQQARNDRT NDKWWLPPVK VPPGGLSEPS RRMLYFQKDS VTQVQKAAMA INAQVLSEME IPESYIDSLP KNGRASLGDS
301: IYKSITEEWF DPEQFLAMLD MSTEHKVLDL KNRIEASVVI WKRKLHTKDT KSSWGSAVSL EKRELFEERA ETILVLLKQK FPGLPQSSLD ISKIQFNKDV
401: GQAVLESYSR ILESLAYTVM SRIEDVLYTD TLALKQTLLA EETSDGGRTT ETDSESAGSS NSGEEAEKHD PHSKTLLDFM GWNDNSSKGG DKPTKSPNLT
501: PKKLSYLEKL ENLNGFRSPK DRH
Arabidopsis Description
ROPGEF8Rho guanine nucleotide exchange factor 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9LV40]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.