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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • cytosol 2
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:mitochondrion
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX92519 Canola plastid 97.85 73.24
Bra002246.1-P Field mustard plastid 97.85 70.41
CDY44926 Canola nucleus 86.83 65.38
CDY42277 Canola nucleus 86.29 64.98
AT5G19560.4 Thale cress mitochondrion 85.48 62.11
CDX88884 Canola cytosol, plastid 74.73 56.97
CDX70882 Canola cytosol 75.27 55.45
CDY03296 Canola nucleus 47.85 53.78
TraesCSU01G211800.1 Wheat cytosol 45.16 51.53
TraesCSU01G211700.1 Wheat cytosol 45.16 49.41
TraesCSU01G217800.1 Wheat cytosol 45.16 49.41
GSMUA_Achr4P10530_001 Banana cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole 54.3 46.87
GSMUA_Achr6P14020_001 Banana cytosol 52.69 45.48
CDY69871 Canola cytosol 13.44 44.64
GSMUA_Achr5P06900_001 Banana cytosol 50.0 44.18
OQU84790 Sorghum cytosol 52.15 44.09
TraesCS6A01G196000.1 Wheat cytosol 51.34 43.81
GSMUA_Achr2P09130_001 Banana cytosol 45.97 43.73
Zm00001d053307_P002 Maize cytosol, plastid 52.69 40.58
CDX67930 Canola nucleus 51.08 39.01
CDY03297 Canola mitochondrion 54.84 39.01
CDY39783 Canola mitochondrion 54.84 38.86
GSMUA_Achr3P03410_001 Banana nucleus 52.69 38.74
CDY46477 Canola nucleus 54.03 38.58
CDX77402 Canola nucleus 54.03 38.58
HORVU6Hr1G050860.4 Barley mitochondrion 51.61 38.17
Os02t0272300-01 Rice plasma membrane 52.15 37.82
TraesCS6D01G183300.1 Wheat mitochondrion 51.34 37.52
VIT_11s0016g03740.t01 Wine grape nucleus 54.84 36.76
GSMUA_Achr3P15410_001 Banana nucleus 48.92 36.69
Zm00001d016001_P002 Maize mitochondrion 52.15 36.33
CDX79407 Canola cytosol, endoplasmic reticulum, nucleus 51.08 35.38
CDY45633 Canola nucleus 49.19 34.99
CDX93028 Canola nucleus 43.82 34.39
CDY12411 Canola cytosol 11.56 33.33
CDX87879 Canola nucleus 48.92 32.67
CDX97723 Canola nucleus 45.7 31.95
CDY52982 Canola nucleus 50.54 31.28
CDY67259 Canola nucleus 50.54 31.28
CDY30136 Canola nucleus 45.7 30.91
CDY28381 Canola nucleus 45.97 28.55
CDY20181 Canola nucleus 45.43 27.84
CDX74772 Canola nucleus, plastid 33.33 27.56
CDY18892 Canola nucleus 33.33 27.43
CDY57376 Canola cytosol, extracellular, nucleus 5.11 25.33
CDY70620 Canola nucleus 31.45 24.95
CDX77457 Canola cytosol 36.29 24.68
CDY07216 Canola cytosol 31.18 24.42
CDX85176 Canola cytosol 35.75 24.31
CDY51157 Canola nucleus 29.57 24.18
CDY31706 Canola cytosol 32.53 24.06
CDX84189 Canola cytosol 31.72 24.03
CDY41197 Canola cytosol, plastid 35.75 24.01
CDY40325 Canola nucleus 36.02 23.93
CDY10476 Canola nucleus 35.75 23.75
CDY40246 Canola cytosol, plastid 35.48 23.7
CDX70109 Canola cytosol 35.75 21.01
CDY62299 Canola cytosol, nucleus, plastid 31.45 20.89
CDY12303 Canola nucleus 31.45 20.78
CDX98888 Canola cytosol 35.48 20.69
CDX91908 Canola cytosol 31.45 17.86
Protein Annotations
Gene3D:1.20.58.2010MapMan:27.4.3.1GO:A0A078J4Q4UniProt:A0A078J4Q4EnsemblPlants:CDY58963ProteinID:CDY58963
ProteinID:CDY58963.1GO:GO:0003674GO:GO:0005085GO:GO:0005089GO:GO:0005488GO:GO:0005515
GO:GO:0008150GO:GO:0065009EnsemblPlantsGene:GSBRNA2T00025405001InterPro:IPR005512PFAM:PF03759InterPro:PRONE_dom
PFscan:PS51334PANTHER:PTHR33101PANTHER:PTHR33101:SF10InterPro:RopGEFUniParc:UPI0004EED491SEG:seg
Description
BnaC09g38110DBnaC09g38110D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078J4Q4]
Coordinates
chrLK033715:+:1..1812
Molecular Weight (calculated)
43002.5 Da
IEP (calculated)
5.815
GRAVY (calculated)
-0.658
Length
372 amino acids
Sequence
(BLAST)
001: KQIGKNGAFT EIMVTKQRDD LLMNIPALRK LDLVLLETLD NFKDQKDFWY VPRDVEDTSN NGDWRRDENW WLPVVKVPSD GLSEESRKLL QSRKDSVAQV
101: LKAATAINDV VLSEMNIPDN YIDSLPKNGK TILGDFLYKI LTDEHFDPDY FLSFLDLSTE HKVLDLKNRI EASMVIWKRK MNQKEKDGKS QWGSSVSLEK
201: RELLEVRAET VLVMLKHQYP GIPQSSFEVS KIKNNKDIGQ AILESYSRVL ENLASKIMSR IEDVLEADAL VQRQMMAEAE RRSAESEVES EYEETEKMES
301: AETPNSRKLS ELIGWRLSSD TKKHCSMSDI ELFHKAEQEK TMKPMMKSPR ALPKKLSFLA KLENMRSPTE RH
Best Arabidopsis Sequence Match ( AT5G19560.3 )
(BLAST)
001: MHATIMVTKQ RDDLLTNIPA LRKLDSVLLE TLDNFKDQKD FWYVPRDMED ADHNGDWRRD ENWWLPVVKV PTDGLSEESR RWLQNQKDSV AQVLKAATAI
101: NAHVLSEMHV PENYIDSLPK NGKTSLGDFL YKSITEESFD PDYFVSFLDL STEHKVLDLK NRIEASMVIW KRKMCQKEKD GKSQWGSTVS LEKRELFEVR
201: AETILVMLKQ QFPGIPQSSL EVSKIKNNKD VGQAILESYS RVLESLASKI MSRIEDVLEA DRLVQRQLMG EAETRSESEA ESEYEETEKV VAAETPNSRK
301: LSDFIGWRLS SDTKKHSSMS DIEFFHKVEQ EKEKPMMKSP RALPKKFSYL AKLENMRSPS DRH
Arabidopsis Description
ATROPGEF10ROP uanine nucleotide exchange factor 10 [Source:TAIR;Acc:AT5G19560]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.