Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY20181 | Canola | nucleus | 94.82 | 93.58 |
| CDX97723 | Canola | nucleus | 70.95 | 79.89 |
| CDY30136 | Canola | nucleus | 72.95 | 79.45 |
| AT3G16130.1 | Thale cress | nucleus | 69.62 | 77.51 |
| CDY45633 | Canola | nucleus | 54.76 | 62.72 |
| CDX87879 | Canola | nucleus | 55.76 | 59.96 |
| CDX67930 | Canola | nucleus | 46.58 | 57.29 |
| CDY67259 | Canola | nucleus | 56.59 | 56.41 |
| CDY52982 | Canola | nucleus | 56.26 | 56.07 |
| CDY03296 | Canola | nucleus | 28.55 | 51.66 |
| CDX79407 | Canola | cytosol, endoplasmic reticulum, nucleus | 46.24 | 51.58 |
| CDY46477 | Canola | nucleus | 44.41 | 51.06 |
| CDX77402 | Canola | nucleus | 44.07 | 50.67 |
| Zm00001d012691_P001 | Maize | cytosol, extracellular, mitochondrion, plastid | 24.21 | 50.52 |
| CDY03297 | Canola | mitochondrion | 44.07 | 50.48 |
| CDY39783 | Canola | mitochondrion | 44.07 | 50.29 |
| TraesCS3D01G296400.1 | Wheat | cytosol | 37.56 | 48.7 |
| HORVU3Hr1G073200.1 | Barley | nucleus | 38.56 | 48.53 |
| TraesCS3B01G331000.1 | Wheat | nucleus | 37.56 | 48.39 |
| CDY44926 | Canola | nucleus | 38.9 | 47.17 |
| TraesCS3B01G304200.1 | Wheat | plastid | 40.4 | 46.9 |
| TraesCS3A01G305500.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 36.73 | 46.81 |
| CDY42277 | Canola | nucleus | 38.56 | 46.76 |
| Zm00001d043383_P001 | Maize | nucleus | 40.73 | 46.65 |
| TraesCS3D01G270200.1 | Wheat | plastid | 40.23 | 46.53 |
| Os01t0760300-01 | Rice | plasma membrane | 40.4 | 46.45 |
| OQU87589 | Sorghum | nucleus | 39.9 | 46.23 |
| CDY58963 | Canola | cytosol | 28.55 | 45.97 |
| Zm00001d038989_P002 | Maize | nucleus, plastid | 38.56 | 45.29 |
| CDX88884 | Canola | cytosol, plastid | 36.89 | 45.29 |
| CDX92519 | Canola | plastid | 37.56 | 45.27 |
| Os01t0675000-01 | Rice | mitochondrion | 41.4 | 44.77 |
| EES19937 | Sorghum | mitochondrion | 40.9 | 44.55 |
| Os05t0560100-01 | Rice | mitochondrion | 41.74 | 43.94 |
| CDX70882 | Canola | cytosol | 36.89 | 43.76 |
| TraesCS1A01G392100.1 | Wheat | plastid | 40.07 | 42.78 |
| KXG33101 | Sorghum | mitochondrion | 39.9 | 42.75 |
| Zm00001d009549_P002 | Maize | mitochondrion | 39.4 | 42.75 |
| TraesCS1D01G400200.2 | Wheat | plastid | 40.07 | 42.48 |
| TraesCS1B01G420200.1 | Wheat | nucleus, plastid | 39.73 | 42.12 |
| CDY57376 | Canola | cytosol, extracellular, nucleus | 5.01 | 40.0 |
| TraesCS3A01G270400.1 | Wheat | plastid | 41.4 | 39.43 |
| Zm00001d043889_P001 | Maize | mitochondrion | 39.73 | 39.34 |
| HORVU3Hr1G062030.1 | Barley | nucleus, plastid | 40.73 | 39.29 |
| CDY69871 | Canola | cytosol | 7.35 | 39.29 |
| CDX93028 | Canola | nucleus | 30.55 | 38.61 |
| CDX74772 | Canola | nucleus, plastid | 28.21 | 37.56 |
| CDY18892 | Canola | nucleus | 28.21 | 37.39 |
| CDY70620 | Canola | nucleus | 28.88 | 36.89 |
| CDY51157 | Canola | nucleus | 27.71 | 36.48 |
| CDY07216 | Canola | cytosol | 28.88 | 36.42 |
| HORVU1Hr1G086590.2 | Barley | plastid | 40.57 | 36.05 |
| CDY10476 | Canola | nucleus | 33.56 | 35.89 |
| CDY40325 | Canola | nucleus | 33.39 | 35.71 |
| CDX77457 | Canola | cytosol | 31.89 | 34.92 |
| CDX85176 | Canola | cytosol | 31.55 | 34.55 |
| CDY41197 | Canola | cytosol, plastid | 31.05 | 33.57 |
| CDY40246 | Canola | cytosol, plastid | 31.22 | 33.57 |
| CDY31706 | Canola | cytosol | 26.21 | 31.21 |
| CDX84189 | Canola | cytosol | 25.38 | 30.96 |
| CDX70109 | Canola | cytosol | 32.55 | 30.81 |
| CDX98888 | Canola | cytosol | 32.05 | 30.09 |
| CDY62299 | Canola | cytosol, nucleus, plastid | 28.05 | 30.0 |
| CDY12303 | Canola | nucleus | 27.88 | 29.66 |
| CDY12411 | Canola | cytosol | 6.34 | 29.46 |
| CDX91908 | Canola | cytosol | 29.38 | 26.87 |
Protein Annotations
| Gene3D:1.20.58.1310 | Gene3D:1.20.58.2010 | MapMan:27.4.3.1 | GO:A0A078GS77 | UniProt:A0A078GS77 | EnsemblPlants:CDY28381 |
| ProteinID:CDY28381 | ProteinID:CDY28381.1 | GO:GO:0003674 | GO:GO:0005085 | GO:GO:0005089 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0008150 | GO:GO:0065009 | EnsemblPlantsGene:GSBRNA2T00040197001 | InterPro:IPR005512 | PFAM:PF03759 |
| InterPro:PRONE_dom | PFscan:PS51334 | PANTHER:PTHR33101 | PANTHER:PTHR33101:SF10 | InterPro:RopGEF | UniParc:UPI0004EF1207 |
| SEG:seg | : | : | : | : | : |
Description
BnaC01g35510DBnaC01g35510D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GS77]
Coordinates
chrLK032218:-:513454..515739
Molecular Weight (calculated)
68638.6 Da
IEP (calculated)
4.995
GRAVY (calculated)
-0.625
Length
599 amino acids
Sequence
(BLAST)
(BLAST)
001: MSHPPKNSSL LQEEKTERLK NREPLLRFKK IVERVRAGEE EEEESNKFRM FDIESMKDQN SSSRQIKKWN SDYALRLEDP DIDDETVFKK TAALSVLPML
101: QPLVKDKTTQ MSEATDEELQ EEAGKEDNIC IHVYNHYDSV IFEVSCVVQK EQMKERFAKL LLGEDMSGGG EGVSSALALS NAITNLSASA FGEQRRLEPI
201: SDDRKERWTR EIGWLLSVTD HIVEFSPTQQ TNKDGSSIEV MTTRQRRDLV SNIPALKKLD VMLTDCLDSF KDQDEFYYIT TDSPESLTSN STRNDDKWWL
301: PTVKVPPTGL SETSKTFLLS QKECVSQVLE SAMAINAEVL SQMEIPESYI DSLPKKGRVS LGDTIYRMLT LDMFDAEQFL LEMDLSSEHK ILELKNKIEA
401: SVVIWKRKIV QKDNKSSSPF STNLSMEKRQ LLEERAATIL FLLKQVFPGI SQSTLDISKI QFNKDIGLAI LESYSRVLES LAHTVLSRIE DVLEADQLTQ
501: ESEVAVCKRD IVKETESPKK EEEKDFCLLE ERPKKSKSTI SLSQVMQWNM EDHEQPKKEK NETPRKKLLT RVSSMINKKT SSYLESLGTT KSPKAWRYS
101: QPLVKDKTTQ MSEATDEELQ EEAGKEDNIC IHVYNHYDSV IFEVSCVVQK EQMKERFAKL LLGEDMSGGG EGVSSALALS NAITNLSASA FGEQRRLEPI
201: SDDRKERWTR EIGWLLSVTD HIVEFSPTQQ TNKDGSSIEV MTTRQRRDLV SNIPALKKLD VMLTDCLDSF KDQDEFYYIT TDSPESLTSN STRNDDKWWL
301: PTVKVPPTGL SETSKTFLLS QKECVSQVLE SAMAINAEVL SQMEIPESYI DSLPKKGRVS LGDTIYRMLT LDMFDAEQFL LEMDLSSEHK ILELKNKIEA
401: SVVIWKRKIV QKDNKSSSPF STNLSMEKRQ LLEERAATIL FLLKQVFPGI SQSTLDISKI QFNKDIGLAI LESYSRVLES LAHTVLSRIE DVLEADQLTQ
501: ESEVAVCKRD IVKETESPKK EEEKDFCLLE ERPKKSKSTI SLSQVMQWNM EDHEQPKKEK NETPRKKLLT RVSSMINKKT SSYLESLGTT KSPKAWRYS
001: MVKASEKEHE KYKPKLFDLE NVKKKNSSSR HFKRWNSDSA LRIEDPDIDD GTVFKKTATS SIQPILPVLA MDEQPQPREA TDEESQKDSE LEQMKDKFAK
101: LLLGEDMSGG SKGVSSALAL SNAITNLAAS AFGEIRRLEA ISEDKKERWR REIGWLLSVT DHIVEFSPTH QTNEDGSSME VMTTKQRTDL VSNIPSLKKL
201: DEMLLDCLDK FKDQDEFYYV TPGSPESENS NSTRNDDKWW LPIVKVPPKG LSETLKRFLL SQRECVCQVL NSAMAINSQV LTEMEIPESY IDSLPKKGRA
301: SLGDMIYRMI TLEMFDAEQF LLEMDLSSEH KILDLKNKFE ASVVIWQRKI VQIDNKSSSP WSTNLSMDKR QQLEERAATI LQLIKQEFPG ISQSTLDISK
401: IQFNRDIGLA IVESYSRILE SLAHTVMSRI EDVLEADQLT QNPELAMCKI HIVKETESPE KEEEPNFCLL EDRPKKQKPT ISLSEVMQWN IETNEPRKEK
501: SDKKLLTRVS SMIMSNNKKT TYLESLGTTR SPTAGRYS
101: LLLGEDMSGG SKGVSSALAL SNAITNLAAS AFGEIRRLEA ISEDKKERWR REIGWLLSVT DHIVEFSPTH QTNEDGSSME VMTTKQRTDL VSNIPSLKKL
201: DEMLLDCLDK FKDQDEFYYV TPGSPESENS NSTRNDDKWW LPIVKVPPKG LSETLKRFLL SQRECVCQVL NSAMAINSQV LTEMEIPESY IDSLPKKGRA
301: SLGDMIYRMI TLEMFDAEQF LLEMDLSSEH KILDLKNKFE ASVVIWQRKI VQIDNKSSSP WSTNLSMDKR QQLEERAATI LQLIKQEFPG ISQSTLDISK
401: IQFNRDIGLA IVESYSRILE SLAHTVMSRI EDVLEADQLT QNPELAMCKI HIVKETESPE KEEEPNFCLL EDRPKKQKPT ISLSEVMQWN IETNEPRKEK
501: SDKKLLTRVS SMIMSNNKKT TYLESLGTTR SPTAGRYS
Arabidopsis Description
ATROPGEF13RHO guanyl-nucleotide exchange factor 13 [Source:TAIR;Acc:AT3G16130]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.