Factsheet for Zm00001d009549_P002

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d000402_P001
Zm00001d002027_P002
Zm00001d002501_P001
Zm00001d003996_P001
Zm00001d008330_P001
Zm00001d011873_P001
Zm00001d012392_P001
Zm00001d016016_P001
Zm00001d016248_P001
Zm00001d018693_P001
Zm00001d023606_P005
Zm00001d025208_P002
Zm00001d036201_P001
Zm00001d040291_P001
Zm00001d041839_P001
Zm00001d042093_P001
Zm00001d043386_P001
Zm00001d045735_P002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G52240.1	Zm00001d002027_P002	AT1G22920.1	21798944
AT1G52240.1	Zm00001d023606_P005	AT1G34430.1	21798944
AT1G52240.1	Zm00001d041839_P001	AT1G34430.1	21798944
AT1G52240.1	Zm00001d011873_P001	AT1G34570.1	21798944
AT1G52240.1	Zm00001d042093_P001	AT1G34570.1	21798944
AT1G52240.1	Zm00001d016248_P001	AT2G42790.1	21798944
AT1G52240.1	Zm00001d018693_P001	AT3G06430.1	21798944
AT1G52240.1	Zm00001d016016_P001	AT3G16120.1	21798944
AT1G52240.1	Zm00001d043386_P001	AT3G16120.1	21798944
AT1G52240.1	Zm00001d002501_P001	AT3G17668.1	21798944
AT1G52240.1	Zm00001d008330_P001	AT4G15930.1	21798944
AT1G52240.1	Zm00001d040291_P001	AT4G15930.1	21798944
AT1G52240.1	Zm00001d036201_P001	AT4G32960.1	21798944
AT1G52240.1	Zm00001d000402_P001	AT5G22310.1	21798944
AT1G52240.1	Zm00001d003996_P001	AT5G22310.1	21798944
AT1G52240.1	Zm00001d025208_P002	AT5G22310.1	21798944
AT1G52240.1	Zm00001d045735_P002	AT5G57660.1	21798944
AT1G52240.1	Zm00001d012392_P001	AT5G64960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES19937	Sorghum	mitochondrion	88.04	88.36
Zm00001d038989_P002	Maize	nucleus, plastid	77.36	83.73
Os05t0560100-01	Rice	mitochondrion	71.01	68.89
TraesCS1B01G420200.1	Wheat	nucleus, plastid	68.12	66.55
TraesCS1A01G392100.1	Wheat	plastid	67.03	65.95
TraesCS1D01G400200.2	Wheat	plastid	67.39	65.84
Zm00001d053307_P002	Maize	cytosol, plastid	48.01	54.87
HORVU1Hr1G086590.2	Barley	plastid	66.49	54.45
Zm00001d012691_P001	Maize	cytosol, extracellular, mitochondrion, plastid	27.9	53.66
Bra021162.1-P	Field mustard	nucleus	39.13	49.77
Zm00001d043383_P001	Maize	nucleus	46.56	49.14
Zm00001d043889_P001	Maize	mitochondrion	53.44	48.76
Zm00001d016001_P002	Maize	mitochondrion	47.1	48.69
Bra018956.1-P	Field mustard	nucleus	47.1	48.51
CDY45633	Canola	nucleus	44.75	47.23
AT1G52240.1	Thale cress	nucleus	46.2	46.96
Bra030396.1-P	Field mustard	nucleus	45.29	46.55
CDX87879	Canola	nucleus	44.75	44.34
Bra027189.1-P	Field mustard	nucleus	42.57	44.34
CDX97723	Canola	nucleus	42.21	43.8
CDY67259	Canola	nucleus	47.46	43.59
CDY52982	Canola	nucleus	47.46	43.59
AT3G16130.1	Thale cress	nucleus	42.39	43.49
CDY30136	Canola	nucleus	43.12	43.27
CDY28381	Canola	nucleus	42.75	39.4
CDY20181	Canola	nucleus	42.57	38.72
Zm00001d021489_P001	Maize	nucleus, plastid	30.8	36.64
Zm00001d002696_P001	Maize	cytosol	30.43	36.36
Zm00001d029850_P001	Maize	nucleus, plastid	32.07	36.2
Zm00001d006269_P001	Maize	cytosol	24.82	35.68
Zm00001d021464_P002	Maize	nucleus, plastid	35.69	34.14
Zm00001d042861_P001	Maize	cytosol	35.14	33.86
Zm00001d010062_P001	Maize	peroxisome	34.6	33.1
Zm00001d017755_P002	Maize	cytosol	27.9	28.47
Zm00001d047899_P001	Maize	cytosol	14.31	28.42
Zm00001d051553_P004	Maize	cytosol	27.54	28.15
Zm00001d023356_P001	Maize	cytosol	16.49	25.63
Zm00001d049679_P001	Maize	plastid	19.57	24.43
Zm00001d037119_P001	Maize	plastid	19.02	24.36
Bra021161.1-P	Field mustard	nucleus	2.36	9.77

Protein Annotations

EnsemblPlants:Zm00001d009549_P002	EnsemblPlants:Zm00001d009549_T002	EnsemblPlantsGene:Zm00001d009549	Gene3D:1.20.58.2010	GO:GO:0003674	GO:GO:0005085
GO:GO:0005089	GO:GO:0005488	GO:GO:0005515	GO:GO:0008150	GO:GO:0065009	InterPro:IPR005512
InterPro:PRONE_dom	InterPro:RopGEF	PANTHER:PTHR33101	PANTHER:PTHR33101:SF3	PFAM:PF03759	PFscan:PS51334
ProteinID:AQK92074.1	SEG:seg	UniParc:UPI000842E97C	UniProt:A0A1D6FJY5	MapMan:27.4.3.1	:

Description

Rop guanine nucleotide exchange factor 9

Coordinates

chr8:-:69759174..69761986

Molecular Weight (calculated)

60984.9 Da

IEP (calculated)

7.935

GRAVY (calculated)

-0.434

Length

552 amino acids

Sequence
(BLAST)

001: MARPFQKIGH GLERFSFRRR RSASSPPLPP LASDGTDASS MEAQAQAQVQ APPFSKRALS RSCGSKGSRL SVDLPPPLAG GPSDRGAAGT SSSSSLAVPP
101: KPVRHEGPPS DADIVREKFS KLLLGEDMSG TGKGVTSALA LSNAITNLAA SVFGEQRRLQ PMAAEQKSRW KKEIYWLLSV ADHIVEFVPS QQVAENGTCM
201: EIMVTQQRQD LKMNIPALRK LDAMLLVEQE YLDSFEGEQE FWYASKDADE PGKGNVPRQD DRWWLPTVRV PPSGLSYAYR KWLQNHKDLV AQVLKAAMAI
301: NANILMEMEV PESYMESLPK NGKSTLGDSA YKLITDDCFD AEELLRSVDL SDEHSIVDLK NRVEASVVIW QKKMTHKDSK LSWGHNARHE KRGMFEGRAE
401: NVLLLIKHRF PGIAQSALDI SKIQCNKDVG LAILESYSRA LESLAFTVMS RIEDVLGADL ATRDDPKNAA GLMRIASLPC SDDTDKVVSD AKAEVERMRR
501: MEPVPPAPML YDFVGPRDQD LGPRVTKISS VATKRFSYLE NLGGTRSPIA RH

Best Arabidopsis Sequence Match ( AT1G52240.1 )
(BLAST)

001: MVKAMEQEQE TYKSRLFHFK NMNENSASRH VKSWSSDCAM RMDGSDNLDD DDNDMMMFRS QPGKCGSVDR PSLPIGGVTP NRNDKLPRVS SSDSMEALII
101: LQAAMEQMKE KFSKLLLGED MSGGGKGVSS ALALSNAITN LAASAFGEQR RLEPMAVDRK TRWRREIGWL ISVADYIVEF APTQQTNKDG TSMEVMSTRQ
201: RTDLLCNIPA LKKLDAMLLD CLDKFKDQDE FYYVKKDSPD SCETRNDEKW WLPAVKVPPN GLSEISRRFL QSQKECVNQV LKAAMAINAQ VLSEMEIPES
301: YLESLPKNGR ASLGDVIYRM ITVEMFDADQ FLIEMDLSSE HKILDLKNRI EASIVIWKRK MVQKDTKSPW GSTVSIEKRE QFEERAETIL LLLKQGFPGI
401: SQSSLDISKI QFNRDVGLAI LESYSRVLES LAHTVMSRIE DVLYADQLTQ EPTNNAPSKN RYSLKENEKL REERLSFTED MASGTLSDVM QWGNKNNEMK
501: KESFFGDREK PLLSKVTGIM TNNKKSSYLD NLGAMRSPTA RYS

Arabidopsis Description

ROPGEF11ROPGEF11 [Source:UniProtKB/TrEMBL;Acc:A0A178W8V0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.