Factsheet for Zm00001d021489_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, plastid

Predictor Summary:

plastid 3
cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d018004_P002
Zm00001d044802_P001
Zm00001d052273_P004

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G45890.1	Zm00001d018004_P002	AT5G62880.1	22500990
AT2G45890.1	Zm00001d044802_P001	AT5G62880.1	22500990
AT2G45890.1	Zm00001d052273_P004	AT5G62880.1	22500990

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER99384	Sorghum	nucleus, plastid	93.75	93.95
Os07t0481100-01	Rice	cytosol	83.62	84.35
TraesCS6A01G405000.1	Wheat	nucleus	80.82	82.06
HORVU6Hr1G092860.2	Barley	nucleus	79.96	81.18
TraesCS6D01G388300.1	Wheat	nucleus	81.03	80.51
TraesCS6B01G449200.1	Wheat	nucleus	80.39	79.19
GSMUA_Achr5P20570_001	Banana	nucleus	55.82	53.73
Zm00001d002696_P001	Maize	cytosol	52.8	53.03
Zm00001d029850_P001	Maize	nucleus, plastid	54.74	51.94
KRH15734	Soybean	cytosol	28.45	50.77
Solyc01g094610.2.1	Tomato	nucleus	51.51	50.1
PGSC0003DMT400000136	Potato	nucleus	51.51	50.1
KRH65102	Soybean	nucleus	51.94	50.1
KRG94270	Soybean	mitochondrion	11.85	49.55
AT4G00460.2	Thale cress	nucleus	50.43	49.47
CDY70620	Canola	nucleus	50.0	49.47
Bra000971.1-P	Field mustard	nucleus	50.43	48.95
CDY51157	Canola	nucleus	47.84	48.79
CDY07216	Canola	cytosol	49.78	48.63
Bra037342.1-P	Field mustard	cytosol	49.78	48.43
KRH48179	Soybean	nucleus	38.79	48.0
VIT_15s0046g02530.t01	Wine grape	plastid	51.94	47.82
CDY57376	Canola	cytosol, extracellular, nucleus	7.54	46.67
CDX74772	Canola	nucleus, plastid	45.04	46.44
KRH40457	Soybean	cytosol	51.08	46.29
KRH00737	Soybean	nucleus, plastid	51.08	46.29
CDY18892	Canola	nucleus	45.04	46.24
Bra004945.1-P	Field mustard	nucleus, plastid	45.26	45.65
AT2G45890.1	Thale cress	nucleus, plastid	45.47	45.57
AT1G01700.4	Thale cress	nucleus	49.57	44.66
Zm00001d042861_P001	Maize	cytosol	47.84	38.74
Zm00001d010062_P001	Maize	peroxisome	47.2	37.95
Zm00001d006269_P001	Maize	cytosol	30.82	37.24
Zm00001d021464_P002	Maize	nucleus, plastid	45.47	36.57
CDX91908	Canola	cytosol	50.22	35.57
Zm00001d012691_P001	Maize	cytosol, extracellular, mitochondrion, plastid	21.77	35.19
Zm00001d053307_P002	Maize	cytosol, plastid	35.56	34.16
Zm00001d038989_P002	Maize	nucleus, plastid	36.21	32.94
Zm00001d043383_P001	Maize	nucleus	35.56	31.55
Zm00001d016001_P002	Maize	mitochondrion	35.78	31.09
Zm00001d009549_P002	Maize	mitochondrion	36.64	30.8
Zm00001d017755_P002	Maize	cytosol	33.84	29.02
Zm00001d043889_P001	Maize	mitochondrion	37.5	28.76
Zm00001d051553_P004	Maize	cytosol	33.19	28.52
Zm00001d047899_P001	Maize	cytosol	16.59	27.7
Zm00001d023356_P001	Maize	cytosol	20.26	26.48
Zm00001d037119_P001	Maize	plastid	21.55	23.2
Zm00001d049679_P001	Maize	plastid	21.55	22.62

Protein Annotations

Gene3D:1.20.58.2010	EntrezGene:103633172	MapMan:27.4.3.1	UniProt:A0A1D6IBJ1	GO:GO:0003674	GO:GO:0005085
GO:GO:0005089	GO:GO:0005488	GO:GO:0005515	GO:GO:0008150	GO:GO:0065009	InterPro:IPR005512
ProteinID:ONM57300.1	PFAM:PF03759	InterPro:PRONE_dom	PFscan:PS51334	PANTHER:PTHR33101	PANTHER:PTHR33101:SF5
InterPro:RopGEF	UniParc:UPI0002219A7D	EnsemblPlantsGene:Zm00001d021489	EnsemblPlants:Zm00001d021489_P001	EnsemblPlants:Zm00001d021489_T001	SEG:seg

Description

Rop guanine nucleotide exchange factor 2

Coordinates

chr7:-:153857228..153860601

Molecular Weight (calculated)

52412.4 Da

IEP (calculated)

6.349

GRAVY (calculated)

-0.441

Length

464 amino acids

Sequence
(BLAST)

001: MSDGSGFPGF HSHSYDRSYS RPLFQVASFS DSGDEQENHV SSPQMCSHST SRTMPAKPVA PSCLSPSVSR LSMKKTQQVI IVEKSMEEEE MELMKEKYTK
101: LLLGEDMSGS GKGVCTAVAI SNSITNLYAT VFGTCHRLEP LSPEKRSMWN REMDCLLSIC EYIVEFSPTV QAMPDGSTHD VMATSPRSDI LMNLPALEKL
201: ETMLLGILDS FHKPEFWYAD QRNQSFKESK KSFQRSEDKW WLPEPCVPDS GLSDCMHREL QQKRDQASQI HKMAMEINSS ILSEMQVPLS YLETLPKSGR
301: VGVGDTIYRY MSSGDQFSPE HLLNFLSLSS EHDALEIADR VEAAMYVWRR KASATHVVSK WENVTELNAD GDKNLVLASR ARSLLLCLKQ RFPGLSQTTL
401: DTSKIQYNKD IGHAILESYS RVLESLAHNI VSWIDDILIA DENVKKGHKI RMQKQVFSQI SPQR

Best Arabidopsis Sequence Match ( AT4G00460.2 )
(BLAST)

001: MENLSNPDEN DDHQSPRSID QNDQSAVETP VYSTMSIDSF VYPRTCSETT SGFSDQIDET NSFCSEASPC NWPVLTESKS SKCLSGLEMQ SNECLVVQEI
101: SEPELETMKE RFAKLLLGED MSGSGKGVCT AVTISNAITN LYATVFGQNL RLEPLETEKR ALWKREMNCL LSVCDYIVEF IPRCQNLSNG ATVEVMESRP
201: RADIYINLPA LRKLDSMLME ALDSFQNTEF WYAEEGSLSM KSARSSTGSF RKVIVQRKEE KWWLPVPLVP SEGLSDKARK QLKNKRESTN QIHKAAMAIN
301: SSILSEMEIP DSYMTTLPKC GKSSVGDSIY RYMSGSGRFF PEQLLDCLNI SSEHEAVQLA DRVEASMYTW RRKSCLSNSK NSWNMVKDLM STTERTDKNY
401: VMAERAETLL FCLKQRYPEL SQTSLDICKI QYNKDVGKAV LESYSRVLEG LAFNIVAWID DVLYVDKTMR GSE

Arabidopsis Description

ROPGEF3Rop guanine nucleotide exchange factor 3 [Source:UniProtKB/Swiss-Prot;Acc:A4IJ27]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.