Factsheet for Os07t0481100-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
mitochondrion 2
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0742200-01
Os06t0234200-03

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G45890.1	Os02t0742200-01	AT5G62880.1	22500990
AT2G45890.1	Os06t0234200-03	AT5G62880.1	22500990

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER99384	Sorghum	nucleus, plastid	86.09	85.53
Zm00001d021489_P001	Maize	nucleus, plastid	84.35	83.62
TraesCS6A01G405000.1	Wheat	nucleus	82.83	83.37
HORVU6Hr1G092860.2	Barley	nucleus	81.96	82.49
TraesCS6D01G388300.1	Wheat	nucleus	83.04	81.8
TraesCS6B01G449200.1	Wheat	nucleus	82.61	80.68
Os04t0559100-00	Rice	cytosol	22.83	57.69
GSMUA_Achr5P20570_001	Banana	nucleus	56.96	54.36
Os10t0550300-00	Rice	plastid	56.52	54.28
KRH15734	Soybean	cytosol	28.7	50.77
VIT_15s0046g02530.t01	Wine grape	plastid	54.13	49.4
AT4G00460.2	Thale cress	nucleus	50.65	49.26
CDY70620	Canola	nucleus	50.22	49.25
KRH65102	Soybean	nucleus	51.3	49.06
Solyc01g094610.2.1	Tomato	nucleus	50.65	48.85
PGSC0003DMT400000136	Potato	nucleus	50.65	48.85
CDY51157	Canola	nucleus	48.26	48.79
Bra000971.1-P	Field mustard	nucleus	50.43	48.54
Bra037342.1-P	Field mustard	cytosol	49.78	48.01
CDY07216	Canola	cytosol	49.57	48.0
CDX74772	Canola	nucleus, plastid	46.52	47.56
CDY18892	Canola	nucleus	46.3	47.12
AT2G45890.1	Thale cress	nucleus, plastid	47.39	47.08
KRH00737	Soybean	nucleus, plastid	51.96	46.68
Bra004945.1-P	Field mustard	nucleus, plastid	46.52	46.52
KRH48179	Soybean	nucleus	37.83	46.4
KRH40457	Soybean	cytosol	51.52	46.29
KRG94270	Soybean	mitochondrion	11.09	45.95
CDY57376	Canola	cytosol, extracellular, nucleus	7.39	45.33
AT1G01700.4	Thale cress	nucleus	50.22	44.85
Os01t0849100-01	Rice	cytosol	46.74	39.38
Os05t0454200-01	Rice	nucleus	47.39	38.38
Os09t0544800-01	Rice	nucleus	45.65	37.43
CDX91908	Canola	cytosol	50.22	35.27
Os01t0760300-01	Rice	plasma membrane	38.04	33.59
Os02t0272300-01	Rice	plasma membrane	36.09	32.36
Os01t0675000-01	Rice	mitochondrion	38.26	31.77
Os05t0560100-01	Rice	mitochondrion	38.7	31.28
Os02t0702600-02	Rice	cytosol	32.61	27.62

Protein Annotations

Gene3D:1.20.58.2010	MapMan:27.4.3.1	EntrezGene:4343233	ProteinID:BAC79842.1	ProteinID:BAF21555.1	ProteinID:BAT01484.1
ncoils:Coil	GO:GO:0003674	GO:GO:0005085	GO:GO:0005089	GO:GO:0005488	GO:GO:0005515
GO:GO:0008150	InterPro:IPR005512	EnsemblPlantsGene:Os07g0481100	EnsemblPlants:Os07t0481100-01	PFAM:PF03759	InterPro:PRONE_dom
PFscan:PS51334	PANTHER:PTHR33101	PANTHER:PTHR33101:SF5	UniProt:Q7XI77	InterPro:RopGEF	UniParc:UPI00001B3A5D
RefSeq:XP_015647297.1	SEG:seg	:	:	:	:

Description

guanine nucleotide exchange factor for Rop 11, guanine nucleotide exchange factor for Rop 12Rop nucleotide exchanger, PRONE domain containing protein. (Os07t0481100-01)

Coordinates

chr7:-:17505856..17508311

Molecular Weight (calculated)

52112.2 Da

IEP (calculated)

6.447

GRAVY (calculated)

-0.507

Length

460 amino acids

Sequence
(BLAST)

001: MSGGSGFPGF HKHGYDRDYA RPLFRVSSFS DNGGGEEQEH YTPSPPRGRS MSRTTSTAPR LSPSVSKLSM KKLQQVVNEK SLEDEEMELM KEKYTKLLLG
101: EDMSGSGKGV CTAVAISNAI TNLYATVFGT CHRLQPLPPE KKAMWNREMD CLLSICEYIV EFSPKVQAMP DGSTHDVMAT SPRSDILMNL PALEKLETML
201: LEILDSFEKT DFWYIDQRKQ SFSDSMKFQR SEDKWWLPEP CVPESGLSDR MHRELQQKRD QASQIHKMAM EINSGILSEM QVPLSYIETL PKSGKVGVGD
301: AIYRYMSAGD QFSPDHLLNF LNLSSEHEAL EIADRVEAAM YVWRRKASMT HVVSKWENVT ELNADGDKNL ILASRARSLL LCLKQRFPGL SQTTLDTSKI
401: QYNKDIGQAI LESYSRVLES LAYNIVSWID DVLIADGNAR KGHNIRMQKQ EFSKLSPQQY

Best Arabidopsis Sequence Match ( AT4G00460.2 )
(BLAST)

001: MENLSNPDEN DDHQSPRSID QNDQSAVETP VYSTMSIDSF VYPRTCSETT SGFSDQIDET NSFCSEASPC NWPVLTESKS SKCLSGLEMQ SNECLVVQEI
101: SEPELETMKE RFAKLLLGED MSGSGKGVCT AVTISNAITN LYATVFGQNL RLEPLETEKR ALWKREMNCL LSVCDYIVEF IPRCQNLSNG ATVEVMESRP
201: RADIYINLPA LRKLDSMLME ALDSFQNTEF WYAEEGSLSM KSARSSTGSF RKVIVQRKEE KWWLPVPLVP SEGLSDKARK QLKNKRESTN QIHKAAMAIN
301: SSILSEMEIP DSYMTTLPKC GKSSVGDSIY RYMSGSGRFF PEQLLDCLNI SSEHEAVQLA DRVEASMYTW RRKSCLSNSK NSWNMVKDLM STTERTDKNY
401: VMAERAETLL FCLKQRYPEL SQTSLDICKI QYNKDVGKAV LESYSRVLEG LAFNIVAWID DVLYVDKTMR GSE

Arabidopsis Description

ROPGEF3Rop guanine nucleotide exchange factor 3 [Source:UniProtKB/Swiss-Prot;Acc:A4IJ27]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.