Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU6Hr1G076210.5 | |
| HORVU7Hr1G038980.5 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G45890.1 | HORVU6Hr1G076210.5 | AT5G62880.1 | 22500990 |
| AT2G45890.1 | HORVU7Hr1G038980.5 | AT5G62880.1 | 22500990 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G405000.1 | Wheat | nucleus | 96.28 | 96.28 |
| TraesCS6D01G388300.1 | Wheat | nucleus | 96.5 | 94.43 |
| TraesCS6B01G449200.1 | Wheat | nucleus | 95.62 | 92.78 |
| Os07t0481100-01 | Rice | cytosol | 82.49 | 81.96 |
| EER99384 | Sorghum | nucleus, plastid | 82.49 | 81.43 |
| Zm00001d021489_P001 | Maize | nucleus, plastid | 81.18 | 79.96 |
| GSMUA_Achr5P20570_001 | Banana | nucleus | 55.8 | 52.9 |
| HORVU1Hr1G053350.4 | Barley | nucleus, plastid | 54.27 | 51.88 |
| PGSC0003DMT400000136 | Potato | nucleus | 51.42 | 49.27 |
| Solyc01g094610.2.1 | Tomato | nucleus | 51.42 | 49.27 |
| KRH65102 | Soybean | nucleus | 51.64 | 49.06 |
| KRH15734 | Soybean | cytosol | 27.57 | 48.46 |
| VIT_15s0046g02530.t01 | Wine grape | plastid | 52.52 | 47.62 |
| CDY70620 | Canola | nucleus | 48.8 | 47.55 |
| AT4G00460.2 | Thale cress | nucleus | 49.02 | 47.36 |
| Bra000971.1-P | Field mustard | nucleus | 49.23 | 47.07 |
| CDY57376 | Canola | cytosol, extracellular, nucleus | 7.66 | 46.67 |
| KRH48179 | Soybean | nucleus | 38.29 | 46.67 |
| CDY51157 | Canola | nucleus | 46.39 | 46.59 |
| CDY07216 | Canola | cytosol | 48.36 | 46.53 |
| Bra037342.1-P | Field mustard | cytosol | 48.36 | 46.33 |
| HORVU2Hr1G096430.13 | Barley | mitochondrion | 53.83 | 46.33 |
| CDX74772 | Canola | nucleus, plastid | 45.51 | 46.22 |
| Bra004945.1-P | Field mustard | nucleus, plastid | 45.95 | 45.65 |
| CDY18892 | Canola | nucleus | 45.08 | 45.58 |
| AT2G45890.1 | Thale cress | nucleus, plastid | 45.73 | 45.14 |
| KRH00737 | Soybean | nucleus, plastid | 50.55 | 45.12 |
| KRG94270 | Soybean | mitochondrion | 10.94 | 45.05 |
| KRH40457 | Soybean | cytosol | 50.33 | 44.92 |
| AT1G01700.4 | Thale cress | nucleus | 49.23 | 43.69 |
| HORVU1Hr1G072910.3 | Barley | cytosol | 46.17 | 37.41 |
| HORVU5Hr1G085510.1 | Barley | nucleus, plastid | 43.54 | 35.16 |
| CDX91908 | Canola | cytosol | 49.45 | 34.5 |
| HORVU6Hr1G050860.4 | Barley | mitochondrion | 36.54 | 33.2 |
| HORVU3Hr1G073200.1 | Barley | nucleus | 34.35 | 32.98 |
| HORVU3Hr1G085680.2 | Barley | plastid | 45.95 | 32.16 |
| HORVU3Hr1G062030.1 | Barley | nucleus, plastid | 39.39 | 28.99 |
| HORVU1Hr1G086590.2 | Barley | plastid | 38.51 | 26.11 |
| HORVU6Hr1G068660.4 | Barley | nucleus | 28.45 | 21.49 |
| HORVU6Hr1G041610.18 | Barley | plastid | 28.45 | 17.33 |
Protein Annotations
| Gene3D:1.20.58.1310 | Gene3D:1.20.58.2010 | MapMan:27.4.3.1 | GO:GO:0003674 | GO:GO:0005085 | GO:GO:0005089 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0008150 | GO:GO:0065009 | EnsemblPlantsGene:HORVU6Hr1G092860 | EnsemblPlants:HORVU6Hr1G092860.2 |
| InterPro:IPR005512 | UniProt:M0X659 | PFAM:PF03759 | InterPro:PRONE_dom | PFscan:PS51334 | PANTHER:PTHR33101 |
| PANTHER:PTHR33101:SF5 | InterPro:RopGEF | UniParc:UPI000295E951 | SEG:seg | : | : |
Description
No Description!
Coordinates
chrchr6H:+:578382474..578385144
Molecular Weight (calculated)
51626.1 Da
IEP (calculated)
6.242
GRAVY (calculated)
-0.502
Length
457 amino acids
Sequence
(BLAST)
(BLAST)
001: MGDSSAFPGF HSHSYDRDYA RPLFRVASFS SERGDEHEHS PRGRTASFKV VPAPSRLSQA MSKLSMKKLQ QAVDDNSVED EEMELIKEKY TKLLLGEDMS
101: GGGKGVCTAV AISNAITNLY ATVFGTCHRL QSLPPEKRSM WNREMDCLLS ICEYIVEFAP TVQARPDGST HDVMATSPRS DILMNLPALE KLETMLLGIL
201: DSFDKAEFWY ADQRKQSFSE TNKSSFKRNE DKWWHPEPCV PESGLSDSLH RELQHKRDQA SQIHKMAMEI NNAILSEMQI PSSYIETLPK TGKVGTGDAI
301: YRYMSSGDQF SPDHLLDFLN LSSEHEALEI ADRVEAAMYV WRRKASMTHV VTKWENVTEL NADGDKNLIL ASRARSLLLC LKQRFPGLSQ TTLDTSKIHY
401: NKDIGQAILE SYSRVLESLA YSIVSWIDDV LLADENAKQG NSTRIQKQVF NHVSPQR
101: GGGKGVCTAV AISNAITNLY ATVFGTCHRL QSLPPEKRSM WNREMDCLLS ICEYIVEFAP TVQARPDGST HDVMATSPRS DILMNLPALE KLETMLLGIL
201: DSFDKAEFWY ADQRKQSFSE TNKSSFKRNE DKWWHPEPCV PESGLSDSLH RELQHKRDQA SQIHKMAMEI NNAILSEMQI PSSYIETLPK TGKVGTGDAI
301: YRYMSSGDQF SPDHLLDFLN LSSEHEALEI ADRVEAAMYV WRRKASMTHV VTKWENVTEL NADGDKNLIL ASRARSLLLC LKQRFPGLSQ TTLDTSKIHY
401: NKDIGQAILE SYSRVLESLA YSIVSWIDDV LLADENAKQG NSTRIQKQVF NHVSPQR
001: MESSSNSDQN EGTPTSSVSS PYRRTYSDIS GLSHRFDVQS FYNRPSNTNA VVLSGHEEDV SEDAEEPKDD VVNDVHGDGD EEDSDIDSAE DAELEMMRER
101: FAKLLLGEDM SGSGKGVCTA VTVSNSITNL YATVFGQSLR LQPLSTEKKD LWKREMNCFM SICDYIVEVI PRSLGTNVEI TETKLRSDIL MSLPALRKLD
201: NMLMEILDSF TENEFWYVER GSSSMNSGGG GRDSGTFRKV VVQRKDEKWW LPVPCVPAEG LSEEERKHLR HKRDCASQIH KAALAINDST LNDMDIPDSY
301: LTTLPKSGKA SVGDVIYKQL CTAEKFYPDQ LLDILKITSE HEALELADKV EASLVTWRRK TGGLTHSKSS WDMMKDISGD ADRGNDKNHI LAARARSLLF
401: CLKQRYPELS QTSLDICKIQ FNRDVGKAVL ESYSRVLEGL AYNVVSWIDD VLYVDRTVRN RDD
101: FAKLLLGEDM SGSGKGVCTA VTVSNSITNL YATVFGQSLR LQPLSTEKKD LWKREMNCFM SICDYIVEVI PRSLGTNVEI TETKLRSDIL MSLPALRKLD
201: NMLMEILDSF TENEFWYVER GSSSMNSGGG GRDSGTFRKV VVQRKDEKWW LPVPCVPAEG LSEEERKHLR HKRDCASQIH KAALAINDST LNDMDIPDSY
301: LTTLPKSGKA SVGDVIYKQL CTAEKFYPDQ LLDILKITSE HEALELADKV EASLVTWRRK TGGLTHSKSS WDMMKDISGD ADRGNDKNHI LAARARSLLF
401: CLKQRYPELS QTSLDICKIQ FNRDVGKAVL ESYSRVLEGL AYNVVSWIDD VLYVDRTVRN RDD
Arabidopsis Description
ROPGEF4Rop guanine nucleotide exchange factor 4 [Source:UniProtKB/Swiss-Prot;Acc:Q0WNP7]
SUBAcon: [nucleus,plastid]
SUBAcon: [nucleus,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.