Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G296400.1 | Wheat | cytosol | 87.82 | 90.48 |
| TraesCS3B01G331000.1 | Wheat | nucleus | 88.03 | 90.11 |
| TraesCS3A01G305500.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 82.56 | 83.62 |
| Zm00001d012691_P001 | Maize | cytosol, extracellular, mitochondrion, plastid | 45.8 | 75.96 |
| Os01t0760300-01 | Rice | plasma membrane | 81.09 | 74.09 |
| OQU87589 | Sorghum | nucleus | 79.83 | 73.5 |
| Zm00001d043383_P001 | Maize | nucleus | 79.62 | 72.47 |
| HORVU6Hr1G050860.4 | Barley | mitochondrion | 54.83 | 51.89 |
| CDY45633 | Canola | nucleus | 53.78 | 48.95 |
| Bra021162.1-P | Field mustard | nucleus | 44.54 | 48.85 |
| Bra018956.1-P | Field mustard | nucleus | 54.62 | 48.51 |
| AT1G52240.1 | Thale cress | nucleus | 55.04 | 48.25 |
| Bra030396.1-P | Field mustard | nucleus | 53.78 | 47.67 |
| CDX87879 | Canola | nucleus | 53.78 | 45.96 |
| Bra027189.1-P | Field mustard | nucleus | 49.37 | 44.34 |
| CDX97723 | Canola | nucleus | 49.16 | 43.98 |
| CDY67259 | Canola | nucleus | 54.83 | 43.43 |
| CDY52982 | Canola | nucleus | 54.62 | 43.26 |
| AT3G16130.1 | Thale cress | nucleus | 48.74 | 43.12 |
| CDY30136 | Canola | nucleus | 49.79 | 43.09 |
| HORVU3Hr1G062030.1 | Barley | nucleus, plastid | 55.04 | 42.19 |
| CDY28381 | Canola | nucleus | 48.53 | 38.56 |
| CDY20181 | Canola | nucleus | 48.32 | 37.89 |
| HORVU5Hr1G085510.1 | Barley | nucleus, plastid | 43.49 | 36.57 |
| HORVU1Hr1G086590.2 | Barley | plastid | 51.68 | 36.5 |
| HORVU1Hr1G053350.4 | Barley | nucleus, plastid | 35.71 | 35.56 |
| HORVU6Hr1G092860.2 | Barley | nucleus | 32.98 | 34.35 |
| HORVU1Hr1G072910.3 | Barley | cytosol | 38.66 | 32.62 |
| HORVU2Hr1G096430.13 | Barley | mitochondrion | 35.92 | 32.2 |
| HORVU3Hr1G085680.2 | Barley | plastid | 39.92 | 29.1 |
| HORVU6Hr1G068660.4 | Barley | nucleus | 29.2 | 22.98 |
| HORVU6Hr1G041610.18 | Barley | plastid | 29.2 | 18.53 |
| Bra021161.1-P | Field mustard | nucleus | 2.52 | 9.02 |
Protein Annotations
| EnsemblPlants:HORVU3Hr1G073200.1 | EnsemblPlantsGene:HORVU3Hr1G073200 | Gene3D:1.20.58.1310 | Gene3D:1.20.58.2010 | GO:GO:0003674 | GO:GO:0005085 |
| GO:GO:0005089 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0008150 | GO:GO:0065009 | InterPro:IPR005512 |
| InterPro:PRONE_dom | InterPro:RopGEF | PANTHER:PTHR33101 | PANTHER:PTHR33101:SF26 | PFAM:PF03759 | PFscan:PS51334 |
| SEG:seg | UniParc:UPI0002955584 | UniProt:M0ZE26 | MapMan:27.4.3.1 | : | : |
Description
No Description!
Coordinates
chrchr3H:+:552704092..552706819
Molecular Weight (calculated)
52782.8 Da
IEP (calculated)
4.873
GRAVY (calculated)
-0.479
Length
476 amino acids
Sequence
(BLAST)
(BLAST)
001: MAANGGLLER RSSVRRSGST VKEEPAADHG AEEHATGPST GPSDMDVMKE KFGKLLLGED MSGSGKGVPS ALALSNAITN LAAAVFGEQR KLEPMSPDRK
101: ARWKKEVGWL LSVADQIVEF VAKKQLLDNG VEMEVMCTQQ RRDLQSNVPA LRKIDAMLLD YLDGFKDRNE FWYVKRDSCS ETEKEESNTS EEKWWIPIVK
201: VPPNGLPPAS RGWIQHQKEL VNQVLKAAMA INANCLMEMA IPESYLESLP KNGRASLGDA LYRIITDVEF DPDDFLSTVD LTSEHKILDL KDRIEASVII
301: WNRKVHNKDG KSAWGSAVSQ EKREQFEERA QTLLLIIKHR YPGIPQSSLD IAKIQENRDV GFAILESYSR VLESLAFNVM SRIEDVIVAD NVAREKAKKD
401: APAGPEPASI PDGSMADSMT LLDFMGWNGD AEGKPDDQSP LAAEQAQDDG RLMKLPNIMT NLKQTYMDVL GGPARN
101: ARWKKEVGWL LSVADQIVEF VAKKQLLDNG VEMEVMCTQQ RRDLQSNVPA LRKIDAMLLD YLDGFKDRNE FWYVKRDSCS ETEKEESNTS EEKWWIPIVK
201: VPPNGLPPAS RGWIQHQKEL VNQVLKAAMA INANCLMEMA IPESYLESLP KNGRASLGDA LYRIITDVEF DPDDFLSTVD LTSEHKILDL KDRIEASVII
301: WNRKVHNKDG KSAWGSAVSQ EKREQFEERA QTLLLIIKHR YPGIPQSSLD IAKIQENRDV GFAILESYSR VLESLAFNVM SRIEDVIVAD NVAREKAKKD
401: APAGPEPASI PDGSMADSMT LLDFMGWNGD AEGKPDDQSP LAAEQAQDDG RLMKLPNIMT NLKQTYMDVL GGPARN
001: MVKAMEQEQE TYKSRLFHFK NMNENSASRH VKSWSSDCAM RMDGSDNLDD DDNDMMMFRS QPGKCGSVDR PSLPIGGVTP NRNDKLPRVS SSDSMEALII
101: LQAAMEQMKE KFSKLLLGED MSGGGKGVSS ALALSNAITN LAASAFGEQR RLEPMAVDRK TRWRREIGWL ISVADYIVEF APTQQTNKDG TSMEVMSTRQ
201: RTDLLCNIPA LKKLDAMLLD CLDKFKDQDE FYYVKKDSPD SCETRNDEKW WLPAVKVPPN GLSEISRRFL QSQKECVNQV LKAAMAINAQ VLSEMEIPES
301: YLESLPKNGR ASLGDVIYRM ITVEMFDADQ FLIEMDLSSE HKILDLKNRI EASIVIWKRK MVQKDTKSPW GSTVSIEKRE QFEERAETIL LLLKQGFPGI
401: SQSSLDISKI QFNRDVGLAI LESYSRVLES LAHTVMSRIE DVLYADQLTQ EPTNNAPSKN RYSLKENEKL REERLSFTED MASGTLSDVM QWGNKNNEMK
501: KESFFGDREK PLLSKVTGIM TNNKKSSYLD NLGAMRSPTA RYS
101: LQAAMEQMKE KFSKLLLGED MSGGGKGVSS ALALSNAITN LAASAFGEQR RLEPMAVDRK TRWRREIGWL ISVADYIVEF APTQQTNKDG TSMEVMSTRQ
201: RTDLLCNIPA LKKLDAMLLD CLDKFKDQDE FYYVKKDSPD SCETRNDEKW WLPAVKVPPN GLSEISRRFL QSQKECVNQV LKAAMAINAQ VLSEMEIPES
301: YLESLPKNGR ASLGDVIYRM ITVEMFDADQ FLIEMDLSSE HKILDLKNRI EASIVIWKRK MVQKDTKSPW GSTVSIEKRE QFEERAETIL LLLKQGFPGI
401: SQSSLDISKI QFNRDVGLAI LESYSRVLES LAHTVMSRIE DVLYADQLTQ EPTNNAPSKN RYSLKENEKL REERLSFTED MASGTLSDVM QWGNKNNEMK
501: KESFFGDREK PLLSKVTGIM TNNKKSSYLD NLGAMRSPTA RYS
Arabidopsis Description
ROPGEF11ROPGEF11 [Source:UniProtKB/TrEMBL;Acc:A0A178W8V0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.