Factsheet for HORVU5Hr1G099820.5

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 2
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
TargetP:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU0Hr1G030130.1
HORVU0Hr1G030280.2
HORVU1Hr1G050970.1
HORVU2Hr1G035400.1
HORVU2Hr1G059480.1
HORVU3Hr1G063860.1
HORVU3Hr1G073190.1
HORVU4Hr1G006500.2
HORVU4Hr1G052280.1
HORVU4Hr1G052310.1
HORVU5Hr1G027630.1
HORVU5Hr1G045070.3
HORVU5Hr1G085520.1
HORVU5Hr1G099820.5
HORVU6Hr1G064680.2
HORVU7Hr1G011400.2
HORVU7Hr1G046060.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G42790.1	HORVU2Hr1G035400.1	AT1G12920.1	21798944
AT2G42790.1	HORVU4Hr1G006500.2	AT1G12920.1	21798944
AT2G42790.1	HORVU2Hr1G059480.1	AT1G76150.1	21798944
AT2G42790.1	HORVU4Hr1G052280.1	AT1G76150.1	21798944
AT2G42790.1	HORVU4Hr1G052310.1	AT1G76150.1	21798944
AT2G42790.1	HORVU5Hr1G027630.1	AT1G76150.1	21798944
AT2G42790.1	HORVU5Hr1G085520.1	AT1G76150.1	21798944
AT2G42790.1	HORVU6Hr1G064680.2	AT1G76150.1	21798944
AT2G42790.1	HORVU7Hr1G046060.1	AT1G76150.1	21798944
AT2G42790.1	HORVU1Hr1G050970.1	AT2G35500.1	21798944
AT2G42790.1	HORVU3Hr1G073190.1	AT3G16120.1	21798944
AT2G42790.1	HORVU7Hr1G011400.2	AT3G16120.1	21798944
AT2G42790.1	HORVU5Hr1G045070.3	AT3G56900.1	21798944
AT2G42790.1	HORVU0Hr1G030280.2	AT3G58750.1	21798944
AT2G42790.1	HORVU5Hr1G099820.5	AT3G58750.1	21798944
AT2G42790.1	HORVU0Hr1G030130.1	AT5G55190.1	21798944
AT3G58740.1	HORVU0Hr1G030280.2	AT2G42790.1	21798944
AT3G58740.1	HORVU5Hr1G099820.5	AT2G42790.1	21798944
AT3G58750.1	HORVU3Hr1G063860.1	AT1G25420.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU5Hr1G099910.1	Barley	cytosol	10.55	100.0
TraesCS5B01G416700.1	Wheat	golgi	92.77	94.43
TraesCS5A01G413300.1	Wheat	mitochondrion	92.58	94.23
TraesCS5D01G422000.1	Wheat	unclear	92.38	94.04
EES04804	Sorghum	mitochondrion	88.67	89.9
Zm00001d016248_P001	Maize	mitochondrion	87.89	89.46
Os02t0232400-01	Rice	nucleus, plastid	86.91	89.0
CDX79848	Canola	cytosol	36.72	85.07
CDY15651	Canola	nucleus	29.3	84.27
GSMUA_Achr10P...	Banana	mitochondrion	74.02	79.62
VIT_12s0142g00610.t01	Wine grape	plastid	78.71	78.71
CDX98329	Canola	cytosol, peroxisome, plastid	77.93	78.7
AT2G42790.1	Thale cress	cytosol	77.93	78.39
CDX67764	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole	77.15	77.76
PGSC0003DMT400020128	Potato	plastid	77.93	77.63
Bra003355.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole	76.95	77.56
Bra007417.1-P	Field mustard	cytosol	76.76	77.51
Solyc07g055840.2.1	Tomato	nucleus, unclear	77.34	77.5
CDY49252	Canola	cytosol	76.56	77.32
CDY50821	Canola	cytosol	76.76	77.06
Solyc12g011000.1.1	Tomato	nucleus	77.34	77.04
CDX71925	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	76.56	76.71
Bra004720.1-P	Field mustard	cytosol	76.37	76.67
CDX79851	Canola	cytosol	76.37	76.67
AT3G58750.1	Thale cress	endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, vacuole	76.95	76.65
PGSC0003DMT400044692	Potato	plastid	76.17	76.32
KRH14452	Soybean	nucleus	74.02	74.17
Bra007416.1-P	Field mustard	cytosol	64.45	73.5
CDY49249	Canola	cytosol	66.8	72.77
KRH73702	Soybean	cytosol, plastid	72.66	72.66
KRG98876	Soybean	nucleus, plastid	72.27	71.98
KRH46090	Soybean	endoplasmic reticulum, nucleus	72.07	71.93
CDY00587	Canola	cytosol	64.65	70.43
Bra014554.1-P	Field mustard	cytosol	64.45	70.21
AT3G58740.1	Thale cress	cytosol	64.84	69.17
CDX71926	Canola	cytosol	62.11	66.39
HORVU0Hr1G030280.2	Barley	cytosol	22.27	63.33
CDX89002	Canola	endoplasmic reticulum, golgi	33.59	60.78
CDY49250	Canola	extracellular	8.79	55.56
VIT_06s0080g00770.t01	Wine grape	cytosol	20.12	48.58
CDX71928	Canola	cytosol	65.82	40.75
HORVU6Hr1G033980.6	Barley	plastid	19.34	20.33

Protein Annotations

Gene3D:1.10.230.10	Gene3D:1.10.580.10	MapMan:5.7.3.6.1	UniProt:A0A287SHJ5	InterPro:Citrate_synth-like_lrg_a-sub	InterPro:Citrate_synth-like_sm_a-sub
InterPro:Citrate_synthase	InterPro:Citrate_synthase_AS	InterPro:Citrate_synthase_bac-typ	InterPro:Citrate_synthase_sf	GO:GO:0003674	GO:GO:0003824
GO:GO:0006091	GO:GO:0006099	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016740
GO:GO:0046912	EnsemblPlantsGene:HORVU5Hr1G099820	EnsemblPlants:HORVU5Hr1G099820.5	InterPro:IPR016142	InterPro:IPR016143	PFAM:PF00285
PIRSF:PIRSF001369	PRINTS:PR00143	ScanProsite:PS00480	PANTHER:PTHR11739	PANTHER:PTHR11739:SF4	SUPFAM:SSF48256
SignalP:SignalP-noTM	UniParc:UPI000B468894	SEG:seg	:	:	:

Description

Citrate synthase [Source:UniProtKB/TrEMBL;Acc:A0A287SHJ5]

Coordinates

chrchr5H:-:610689986..610695628

Molecular Weight (calculated)

56236.4 Da

IEP (calculated)

9.259

GRAVY (calculated)

-0.214

Length

512 amino acids

Sequence
(BLAST)

001: GSNSSRGLSK QPLPSRLSLA LLVSSLLAPT DSMDPASLER SPVSAASPGT RAGVLAVVDS RTGKRYEVKV SEDGTVRATD FKKITTGKDD NGLKTYDPGY
101: LNTAPVRSSI CYIDGDEGIL RYRGYPIEEV AESSSFVEVA YLLMYGNLPT QSQLAGWEFA ISQHSAVPQG LLDIIQSMPH DAHPMGVLAS AMSTLSVFHP
201: DANPALRGQD LYKSKQVRDK QIVRVLGKAP AIAAAAYLRL AGRPAVLPSN NLSYSENFLY MLDSLGNKEY KPNPRLARVL DILFILHAEH EMNCSTAAVR
301: HLASSGVDVF TALSGGVGAL YGPLHGGANE AVLKMLNEIG AVENIPDFIE GVKNRKRKMS GFGHRVYKNY DPRAKVIRKL AEEVFSIVGR DPLIEVAVAL
401: EKAALSDDYF IKRKLYPNVD FYSGLIYRAM GFPTEFFPVL FAIPRMAGWL AHWKESLDDP DNKIMRPQQV YTGVWLRHYT PVRERVTSNQ DEELGQIATS
501: NATRRRRAGS SL

Best Arabidopsis Sequence Match ( AT3G58750.1 )
(BLAST)

001: MEISQRVKAR LAVLTAHLAV SDTVGLEQVL PAIAPWCTSA HITAAPHGSL KGNLTIVDER TGKKYQVPVS EHGTVKAVDL KKITTGKDDK GLKLYDPGYL
101: NTAPVRSSIC YIDGDEGILR YRGYPIEELA ESSTFIEVAY LLMYGNLPSQ SQLADWEFTV SQHSAVPQGV LDIIQSMPHD AHPMGVLVSA MSALSIFHPD
201: ANPALSGQDI YKSKQVRDKQ IVRILGKAPT IAAAAYLRTA GRPPVLPSAN LSYSENFLYM LDSMGNRSYK PNPRLARVLD ILFILHAEHE MNCSTAAARH
301: LASSGVDVYT ACAGAVGALY GPLHGGANEA VLKMLAEIGT AENIPDFIEG VKNRKRKMSG FGHRVYKNYD PRAKVIKKLA DEVFSIVGRD PLIEVAVALE
401: KAALSDEYFV KRKLYPNVDF YSGLIYRAMG FPPEFFTVLF AVPRMAGYLS HWRESLDDPD TRIMRPQQAY TGVWMRHYEP VRERTLSSDS DKDKFGQVSI
501: SNASRRRLAG SSAL

Arabidopsis Description

CSY2Citrate synthase 2, peroxisomal [Source:UniProtKB/Swiss-Prot;Acc:Q9LXS6]
SUBAcon: [extracellular,endoplasmic reticulum,vacuole,mitochondrion,plasma membrane,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.