Factsheet for Bra007417.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
vacuole 2
cytosol 4
peroxisome 1
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, peroxisome, plastid, secretory
BaCelLo:	plastid
EpiLoc:	vacuole
MultiLoc:	cytosol
Plant-mPloc:	cytosol, peroxisome
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra012478.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G58750.1	Bra012478.1-P	AT1G25420.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY49252	Canola	cytosol	99.41	99.41
CDX71925	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	98.62	97.85
Bra003355.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole	95.07	94.88
AT3G58750.1	Thale cress	endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, vacuole	92.9	91.63
Bra004720.1-P	Field mustard	cytosol	87.57	87.06
Bra007416.1-P	Field mustard	cytosol	72.58	81.96
Solyc12g011000.1.1	Tomato	nucleus	82.64	81.52
PGSC0003DMT400020128	Potato	plastid	82.25	81.13
VIT_12s0142g00610.t01	Wine grape	plastid	81.46	80.66
Solyc07g055840.2.1	Tomato	nucleus, unclear	81.07	80.43
Bra014554.1-P	Field mustard	cytosol	74.56	80.43
PGSC0003DMT400044692	Potato	plastid	80.47	79.84
Os02t0232400-01	Rice	nucleus, plastid	78.5	79.6
Zm00001d016248_P001	Maize	mitochondrion	78.3	78.93
TraesCS5B01G416700.1	Wheat	golgi	78.3	78.93
EES04804	Sorghum	mitochondrion	78.5	78.81
TraesCS5D01G422000.1	Wheat	unclear	78.11	78.73
TraesCS5A01G413300.1	Wheat	mitochondrion	78.11	78.73
GSMUA_Achr10P...	Banana	mitochondrion	73.37	78.15
KRH14452	Soybean	nucleus	77.71	77.1
HORVU5Hr1G099820.5	Barley	plastid	77.51	76.76
KRH73702	Soybean	cytosol, plastid	76.53	75.78
KRH46090	Soybean	endoplasmic reticulum, nucleus	75.54	74.66
KRG98876	Soybean	nucleus, plastid	75.35	74.32
HORVU0Hr1G030280.2	Barley	cytosol	19.92	56.11
VIT_06s0080g00770.t01	Wine grape	cytosol	21.3	50.94
Bra000351.1-P	Field mustard	cytosol	21.3	24.32
Bra014513.1-P	Field mustard	mitochondrion	22.09	23.73
Bra037657.1-P	Field mustard	mitochondrion	21.89	23.37

Protein Annotations

Gene3D:1.10.230.10	Gene3D:1.10.580.10	MapMan:5.7.3.6.1	EnsemblPlantsGene:Bra007417	EnsemblPlants:Bra007417.1	EnsemblPlants:Bra007417.1-P
InterPro:Citrate_synth-like_lrg_a-sub	InterPro:Citrate_synth-like_sm_a-sub	InterPro:Citrate_synthase	InterPro:Citrate_synthase_AS	InterPro:Citrate_synthase_bac-typ	InterPro:Citrate_synthase_sf
ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0006091	GO:GO:0006099	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016740	GO:GO:0046912	InterPro:IPR016142	InterPro:IPR016143
UniProt:M4CT75	PFAM:PF00285	PIRSF:PIRSF001369	PRINTS:PR00143	ScanProsite:PS00480	PANTHER:PTHR11739
PANTHER:PTHR11739:SF4	SUPFAM:SSF48256	UniParc:UPI0002542E50	:	:	:

Description

AT3G58750 (E=6e-272) CSY2 | CSY2 (citrate synthase 2); citrate (SI)-synthase

Coordinates

chrA09:-:29081218..29084333

Molecular Weight (calculated)

55867.2 Da

IEP (calculated)

8.933

GRAVY (calculated)

-0.178

Length

507 amino acids

Sequence
(BLAST)

001: MEISERVKAR LAVLTAHIAV SDPVGSSQVL PAGEIERWCT SSAGSLKGSL TIVDERTGKK YQVPVSEDGT VRSVDLKKIT TGKDDKGLKL YDPGYLNTAP
101: VRSSISYIDG DEGILRYRGY PIEELAESST FIEVSYLLMY GNLPSQSQLA DWEFTISQHS AVPQGVLEII QSMPHDAHPM GVLVSAMSAL SIFHPDANPA
201: LSGQDIYKSK QVRDKQIVRI LGKAPTIAAA AYLRMAGRPP VLPSGNLSYA ENFLYMLDSM GNRSYKPNPR LARVLDILFI LHAEHEMNCS TAAARHLASS
301: GVDVYTAVAG AVGALYGPLH GGANEAVLKM LAEIGSVENI PEFIEGVKNR KRKMSGFGHR VYKNYDPRAK VIKKLADEVF SIVGRDPLIE VAVALEKAAL
401: SDEYFVKRKL YPNVDFYSGL IYRAMGFPPE FFTVLFAVPR MAGYLSHWRE SLDDPDTKIM RPQQAYTGVW LRHYEPVRQR TLSSDSDKMG QVSISNASRR
501: RLSGSAL

Best Arabidopsis Sequence Match ( AT3G58750.1 )
(BLAST)

001: MEISQRVKAR LAVLTAHLAV SDTVGLEQVL PAIAPWCTSA HITAAPHGSL KGNLTIVDER TGKKYQVPVS EHGTVKAVDL KKITTGKDDK GLKLYDPGYL
101: NTAPVRSSIC YIDGDEGILR YRGYPIEELA ESSTFIEVAY LLMYGNLPSQ SQLADWEFTV SQHSAVPQGV LDIIQSMPHD AHPMGVLVSA MSALSIFHPD
201: ANPALSGQDI YKSKQVRDKQ IVRILGKAPT IAAAAYLRTA GRPPVLPSAN LSYSENFLYM LDSMGNRSYK PNPRLARVLD ILFILHAEHE MNCSTAAARH
301: LASSGVDVYT ACAGAVGALY GPLHGGANEA VLKMLAEIGT AENIPDFIEG VKNRKRKMSG FGHRVYKNYD PRAKVIKKLA DEVFSIVGRD PLIEVAVALE
401: KAALSDEYFV KRKLYPNVDF YSGLIYRAMG FPPEFFTVLF AVPRMAGYLS HWRESLDDPD TRIMRPQQAY TGVWMRHYEP VRERTLSSDS DKDKFGQVSI
501: SNASRRRLAG SSAL

Arabidopsis Description

CSY2Citrate synthase 2, peroxisomal [Source:UniProtKB/Swiss-Prot;Acc:Q9LXS6]
SUBAcon: [extracellular,endoplasmic reticulum,vacuole,mitochondrion,plasma membrane,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.