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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • plastid 3
  • cytosol 3
  • peroxisome 2
  • mitochondrion 1
  • extracellular 1
  • golgi 1
  • plasma membrane 1
  • endoplasmic reticulum 1
  • vacuole 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, peroxisome, plastid, secretory
BaCelLo:plastid
EpiLoc:plastid
iPSORT:plastid
MultiLoc:cytosol
Plant-mPloc:cytosol, peroxisome
Predotar:secretory
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:peroxisome
 nucleus: 28499913
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
PPI

Inferred distinct locusB in Crop

locusBlocations
KRG90825
KRG94758
KRG95023
KRG98876
KRH06769
KRH08442
KRH09439
KRH09878
KRH14452
KRH23441
KRH35947
KRH37825
KRH38906
KRH46090
KRH49412
KRH51640
KRH52483
KRH52484
KRH52485
KRH60966
KRH61808
KRH61809
KRH61811
KRH66657
KRH70101
KRH73702
KRH74369

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G42790.1 KRG94758 AT1G12920.1 21798944
AT2G42790.1 KRH06769 AT1G12920.1 21798944
AT2G42790.1 KRH08442 AT1G12920.1 21798944
AT2G42790.1 KRH09439 AT1G12920.1 21798944
AT2G42790.1 KRH38906 AT1G12920.1 21798944
AT2G42790.1 KRH70101 AT1G12920.1 21798944
AT2G42790.1 KRH51640 AT1G76150.1 21798944
AT2G42790.1 KRH60966 AT1G76150.1 21798944
AT2G42790.1 KRH49412 AT2G35500.1 21798944
AT2G42790.1 KRH74369 AT2G35500.1 21798944
AT2G42790.1 KRH09878 AT3G16120.1 21798944
AT2G42790.1 KRH23441 AT3G16120.1 21798944
AT2G42790.1 KRG95023 AT3G56900.1 21798944
AT2G42790.1 KRH37825 AT3G56900.1 21798944
AT2G42790.1 KRH66657 AT3G56900.1 21798944
AT2G42790.1 KRG98876 AT3G58750.1 21798944
AT2G42790.1 KRH14452 AT3G58750.1 21798944
AT2G42790.1 KRH46090 AT3G58750.1 21798944
AT2G42790.1 KRH73702 AT3G58750.1 21798944
AT2G42790.1 KRH52483 AT5G55190.1 21798944
AT2G42790.1 KRH52484 AT5G55190.1 21798944
AT2G42790.1 KRH52485 AT5G55190.1 21798944
AT2G42790.1 KRH61808 AT5G55190.1 21798944
AT2G42790.1 KRH61809 AT5G55190.1 21798944
AT2G42790.1 KRH61811 AT5G55190.1 21798944
AT3G58740.1 KRG98876 AT2G42790.1 21798944
AT3G58740.1 KRH14452 AT2G42790.1 21798944
AT3G58740.1 KRH46090 AT2G42790.1 21798944
AT3G58740.1 KRH73702 AT2G42790.1 21798944
AT3G58750.1 KRG90825 AT1G25420.1 21798944
AT3G58750.1 KRH35947 AT1G25420.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH73702 Soybean cytosol, plastid 94.32 94.14
CDX79848 Canola cytosol 36.79 85.07
KRH46090 Soybean endoplasmic reticulum, nucleus 83.56 83.24
CDY15651 Canola nucleus 28.96 83.15
KRG98876 Soybean nucleus, plastid 82.97 82.49
VIT_12s0142g00610.t01 Wine grape plastid 79.65 79.49
Bra003355.1-P Field mustard cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole 78.67 79.13
CDX98329 Canola cytosol, peroxisome, plastid 78.47 79.09
CDX79851 Canola cytosol 78.86 79.02
CDY50821 Canola cytosol 78.86 79.02
Bra004720.1-P Field mustard cytosol 78.86 79.02
CDX67764 Canola cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole 78.47 78.94
CDY49252 Canola cytosol 77.69 78.3
AT2G42790.1 Thale cress cytosol 77.69 78.0
CDX71925 Canola cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole 77.89 77.89
Bra007417.1-P Field mustard cytosol 77.1 77.71
GSMUA_Achr10P... Banana mitochondrion 72.21 77.52
AT3G58750.1 Thale cress endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, vacuole 77.69 77.24
Solyc12g011000.1.1 Tomato nucleus 77.1 76.65
TraesCS5A01G413300.1 Wheat mitochondrion 75.34 76.54
TraesCS5B01G416700.1 Wheat golgi 75.34 76.54
Solyc07g055840.2.1 Tomato nucleus, unclear 76.52 76.52
PGSC0003DMT400020128 Potato plastid 76.91 76.46
TraesCS5D01G422000.1 Wheat unclear 74.95 76.14
Os02t0232400-01 Rice nucleus, plastid 73.97 75.6
PGSC0003DMT400044692 Potato plastid 75.34 75.34
Zm00001d016248_P001 Maize mitochondrion 73.97 75.15
EES04804 Sorghum mitochondrion 73.97 74.85
HORVU5Hr1G099820.5 Barley plastid 74.17 74.02
Bra007416.1-P Field mustard cytosol 64.77 73.72
CDY49249 Canola cytosol 67.32 73.19
Bra014554.1-P Field mustard cytosol 65.36 71.06
CDY00587 Canola cytosol 65.17 70.85
AT3G58740.1 Thale cress cytosol 65.56 69.79
CDX71926 Canola cytosol 64.38 68.68
CDX89002 Canola endoplasmic reticulum, golgi 34.44 62.19
HORVU0Hr1G030280.2 Barley cytosol 19.18 54.44
CDY49250 Canola extracellular 8.02 50.62
VIT_06s0080g00770.t01 Wine grape cytosol 20.35 49.06
CDX71928 Canola cytosol 65.95 40.75
KRH13859 Soybean mitochondrion 22.7 24.58
KRH43565 Soybean mitochondrion 22.7 24.58
Protein Annotations
Gene3D:1.10.230.10Gene3D:1.10.580.10EntrezGene:100170739MapMan:5.7.3.6.1EMBL:ACUP02008502InterPro:Citrate_synth-like_lrg_a-sub
InterPro:Citrate_synth-like_sm_a-subInterPro:Citrate_synthaseInterPro:Citrate_synthase_ASInterPro:Citrate_synthase_bac-typInterPro:Citrate_synthase_sfEnsemblPlantsGene:GLYMA_14G026400
GO:GO:0003674GO:GO:0003824GO:GO:0006091GO:GO:0006099GO:GO:0008150GO:GO:0008152
GO:GO:0009987GO:GO:0016740GO:GO:0046912UniProt:I1M6V7InterPro:IPR016142InterPro:IPR016143
EnsemblPlants:KRH14452ProteinID:KRH14452ProteinID:KRH14452.1PFAM:PF00285PIRSF:PIRSF001369PRINTS:PR00143
ScanProsite:PS00480PANTHER:PTHR11739PANTHER:PTHR11739:SF4SUPFAM:SSF48256UniParc:UPI00023D4A5D:
Description
hypothetical protein
Coordinates
chr14:-:1899269..1904627
Molecular Weight (calculated)
56478.0 Da
IEP (calculated)
9.190
GRAVY (calculated)
-0.159
Length
511 amino acids
Sequence
(BLAST)
001: MSSNSDAAAA TVHARGRLAM LAAHLLPFEL TDHDALRPIP LSAQLPPTNL AGSLTVVDDR TGKKYQLQVS KEGTVKASDL KKISTGKNDK GLKLYDPGYL
101: NTAPVRSAIS YIDGDEGILR YRGYPIEELA EKSTFTEVSY LIMYGSLPSE SQLAEWEFAI SQHSAVPQGI LDIIQSMPHD AHPMGVLVNA MSALSVFHPD
201: ANPALRGLDI YDSKQIRDKQ ITRVIGKITT IAAAVYLRMA GRPPVLPSNH LSYTENFLYM LDSFGNRSYK PNPRLTRVLD IIFILHAEHE MNCSTSAVRH
301: LASSGVDVYT AIAGAVGALY GPLHGGANEA VLKMLSEIGT VQNIPEFIEG VKARKRKLSG FGHRVYKNYD PRAKVLRKLA EEVFSIVGRD PLIEVAVALE
401: KVALSDEYFI KRKLYPNVDF YSGLIYRAMG FPPEYFTVLF AIPRMAGYLA HWRESLDDPD TKILRPQQVY VGDWLRHYTP VNVRTTSRDA DKLGEVSISN
501: ASKRRLAGSG V
Best Arabidopsis Sequence Match ( AT2G42790.1 )
(BLAST)
001: MEISERVRAR LAVLSGHLSE GKQDSPAIER WCTSADTSVA PLGSLKGTLT IVDERTGKNY KVPVSDDGTV KAVDFKKIVT GKEDKGLKLY DPGYLNTAPV
101: RSSISYIDGD EGILRYRGYP IEEMAENSTF LEVAYLLMYG NLPSESQLSD WEFAVSQHSA VPQGVLDIIQ SMPHDAHPMG VLVSAMSALS IFHPDANPAL
201: RGQDIYDSKQ VRDKQIIRII GKAPTIAAAA YLRMAGRPPV LPSGNLPYAD NFLYMLDSLG NRSYKPNPRL ARVLDILFIL HAEHEMNCST AAARHLASSG
301: VDVYTAVAGA VGALYGPLHG GANEAVLKML SEIGTVENIP EFIEGVKNRK RKMSGFGHRV YKNYDPRAKV IKNLADEVFS IVGKDPLIEV AVALEKAALS
401: DDYFVKRKLY PNVDFYSGLI YRAMGFPPEF FTVLFAIPRM AGYLSHWKES LDDPDTKIMR PQQVYTGVWL RHYTPVRERI VTDDSKESDK LGQVATSNAS
501: RRRLAGSSV
Arabidopsis Description
CSY3Citrate synthase [Source:UniProtKB/TrEMBL;Acc:Q0WUX6]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.