CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

cytosol 5
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG98876
KRH14452
KRH46090
KRH73702

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G12920.1	KRG98876	AT3G58750.1	21798944
AT1G12920.1	KRH14452	AT3G58750.1	21798944
AT1G12920.1	KRH46090	AT3G58750.1	21798944
AT1G12920.1	KRH73702	AT3G58750.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH70101	Soybean	cytosol	97.71	97.48
KRH06769	Soybean	mitochondrion	79.82	94.31
EER93602	Sorghum	cytosol	93.58	93.36
GSMUA_Achr8P09860_001	Banana	cytosol	66.06	93.2
Os03t0702800-01	Rice	cytosol, plasma membrane	93.35	93.14
GSMUA_Achr10P...	Banana	cytosol	60.32	92.61
EER99630	Sorghum	cytosol	92.43	92.22
Os07t0587400-01	Rice	cytosol	92.43	92.22
AT3G26618.1	Thale cress	cytosol	91.51	91.72
TraesCS2A01G192900.1	Wheat	cytosol	91.74	91.53
TraesCS2B01G213800.1	Wheat	cytosol	91.51	91.3
KRH09439	Soybean	cytosol	91.06	90.85
TraesCS4D01G038300.1	Wheat	cytosol	90.6	90.39
TraesCS4A01G273100.1	Wheat	cytosol	90.6	90.39
TraesCS4B01G040900.1	Wheat	cytosol	90.6	90.39
AT1G12920.1	Thale cress	cytosol	89.68	90.09
KRG94758	Soybean	cytosol, endoplasmic reticulum	71.33	89.63
PGSC0003DMT400060405	Potato	cytosol	89.68	89.47
Solyc05g055210.1.1	Tomato	plastid	89.68	89.47
PGSC0003DMT400019675	Potato	cytosol	89.45	89.24
Solyc11g006660.1.1	Tomato	nucleus	89.45	89.24
KRH38906	Soybean	endoplasmic reticulum	92.2	89.14
GSMUA_Achr6P09990_001	Banana	cytosol	16.28	84.52
GSMUA_Achr10P...	Banana	cytosol	15.6	76.4
GSMUA_Achr11P...	Banana	cytosol, mitochondrion	85.55	67.94
CDX98026	Canola	cytosol	18.58	57.86
HORVU3Hr1G060530.4	Barley	cytosol	29.36	52.67
Zm00001d021144_P001	Maize	cytosol	20.64	50.56
Bra019799.1-P	Field mustard	cytosol	8.03	33.98

Protein Annotations

EntrezGene:100813343	MapMan:17.3.2.1.1	Gene3D:3.30.1330.30	Gene3D:3.30.420.60	Gene3D:3.30.960.10	EMBL:ACUP02010176
EnsemblPlantsGene:GLYMA_16G150000	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003747	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006412	GO:GO:0006415
GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043
GO:GO:0019538	UniProt:I1MNR1	InterPro:IPR024049	InterPro:IPR029064	EnsemblPlants:KRH08442	ProteinID:KRH08442
ProteinID:KRH08442.1	InterPro:L30e-like	PFAM:PF03463	PFAM:PF03464	PFAM:PF03465	PANTHER:PTHR10113
PANTHER:PTHR10113:SF19	InterPro:Peptide_chain-rel_eRF1/aRF1	InterPro:Release_factor_eRF1/aRF1_N	SMART:SM01194	SUPFAM:SSF53137	SUPFAM:SSF55315
SUPFAM:SSF55481	TIGRFAMs:TIGR03676	UniParc:UPI000233BD49	InterPro:eRF1_1_Pelota	InterPro:eRF1_2	InterPro:eRF1_3
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr16:+:31049934..31054215

Molecular Weight (calculated)

49017.2 Da

IEP (calculated)

5.170

GRAVY (calculated)

-0.427

Length

436 amino acids

Sequence
(BLAST)

001: MSDGQESDKN IEIWKIKKLI KALEAARGNG TSMISLIMPP RDQISRVTKM LGDEFGTASN IKSRVNRQSV LGAITSAQQR LKLYNKVPPN GLVLYTGTIV
101: TEDGKEKKVT IDFEPFKPIN ASLYLCDNKF HTEALNELLE SDDKFGFIVM DGNGTLFGTL SGNTREVLHK FTVDLPKKHG RGGQSALRFA RLRMEKRHNY
201: VRKTAEYATQ YFINTATSQP NVSGLILAGS ADFKTELSQS DMFDPRLQAK ILNVVDVSYG GENGFNQAIE LSAEILSNVK FIQEKRLIGK YFEEISQDTG
301: KYVFGVEDTL KALEMGAVET LIVWENLDIN RYVLKNGTTS EIIIKHLNKE QDADQSNFRD SATSAELEVQ EKMPLLEWFA NEYKKFGCSL EFVTNKSQEG
401: SQFCRGFGGI GGILRYQLDI RSFDELSDDE VYEDSD

Best Arabidopsis Sequence Match ( AT3G26618.1 )
(BLAST)

001: MADQESDKNI EIWKIKKLIK GLETARGNGT SMISLIMPPR DQVARVTKML ADEYGTASNI KSRVNRQSVL SAITSAQQRL KLYNKVPPNG LVLYTGTIVT
101: DDGKEKKVTI DFEPFKPINA SLYLCDNKFH TEPLNELLES DDKFGFIVMD GNGTLFGTLS GNTREVLHKF TVDLPKKHGR GGQSALRFAR LRMEKRHNYV
201: RKTAELATQF YINPATSQPN VSGLILAGSA DFKTELSQSE LFDPRLQAKI LNVVDVSYGG ENGFNQAIEL SAEILSNVKF IQEKKLIGKY FEEISQDTGK
301: YVFGVEDTLK ALEMGAVETL IVWENLDINR YELKNNTTGE IVIKHLGKDQ ENNQSNFHDA ETNAELEVQE KMPLLEWFAN EYKRFGCTLE FVTNKSQEGS
401: QFCRGFGGIG GLLRYQLDMR TFDELSDGEV YEDSD

Arabidopsis Description

ERF1-3ERF1-3 [Source:UniProtKB/TrEMBL;Acc:A0A178VIS2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.