Factsheet for Zm00001d021144_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU3Hr1G060530.4	Barley	cytosol	31.46	23.05
Zm00001d013481_P001	Maize	cytosol, extracellular	52.81	21.51
KRH06769	Soybean	mitochondrion	44.38	21.41
Zm00001d006725_P001	Maize	cytosol, extracellular	51.69	21.05
Solyc05g055210.1.1	Tomato	plastid	51.12	20.82
PGSC0003DMT400060405	Potato	cytosol	51.12	20.82
KRH70101	Soybean	cytosol	51.12	20.82
KRH08442	Soybean	cytosol, nucleus	50.56	20.64
Solyc11g006660.1.1	Tomato	nucleus	50.56	20.59
PGSC0003DMT400019675	Potato	cytosol	50.56	20.59
KRG94758	Soybean	cytosol, endoplasmic reticulum	35.39	18.16
GSMUA_Achr10P...	Banana	cytosol	28.65	17.96
Zm00001d037868_P001	Maize	cytosol	41.01	16.67
GSMUA_Achr11P...	Banana	cytosol, mitochondrion	51.12	16.58
CDX98026	Canola	cytosol	10.11	12.86
GSMUA_Achr8P09860_001	Banana	cytosol	21.35	12.3
Bra019799.1-P	Field mustard	cytosol	5.06	8.74
GSMUA_Achr6P09990_001	Banana	cytosol	2.81	5.95
GSMUA_Achr10P...	Banana	cytosol	2.81	5.62

Protein Annotations

Gene3D:3.30.1330.30	Gene3D:3.30.420.60	MapMan:35.1	UniProt:A0A1D6I8K5	ncoils:Coil	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003747	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006412	GO:GO:0006415	GO:GO:0008135	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0019538	InterPro:IPR029064
InterPro:L30e-like	ProteinID:ONM56376.1	PFAM:PF03465	PANTHER:PTHR10113	PANTHER:PTHR10113:SF14	InterPro:Peptide_chain-rel_eRF1/aRF1
SUPFAM:SSF55315	UniParc:UPI0008454398	EnsemblPlantsGene:Zm00001d021144	EnsemblPlants:Zm00001d021144_P001	EnsemblPlants:Zm00001d021144_T001	InterPro:eRF1_3
SEG:seg	:	:	:	:	:

Description

Eukaryotic peptide chain release factor subunit 1-2

Coordinates

chr7:+:143962423..143965375

Molecular Weight (calculated)

20591.8 Da

IEP (calculated)

8.643

GRAVY (calculated)

-0.497

Length

178 amino acids

Sequence
(BLAST)

001: MTISLITTPK RTISLMNQGQ ATNTYILDQQ IHYSGSTMMQ TMMQKFYTKL KEKRKALEEE KLQAEAKKWC FKIPRTQDCV TIYESWRTTV GEWRDPWTQT
101: QRRKGESLLN VVDVSYGGEN LFNQAIELSA EILANVKFIQ VKKLIGKNFE EISQDTGKYV FGVDDTLKAL EMGAVETW

Best Arabidopsis Sequence Match ( AT3G26618.1 )
(BLAST)

001: MADQESDKNI EIWKIKKLIK GLETARGNGT SMISLIMPPR DQVARVTKML ADEYGTASNI KSRVNRQSVL SAITSAQQRL KLYNKVPPNG LVLYTGTIVT
101: DDGKEKKVTI DFEPFKPINA SLYLCDNKFH TEPLNELLES DDKFGFIVMD GNGTLFGTLS GNTREVLHKF TVDLPKKHGR GGQSALRFAR LRMEKRHNYV
201: RKTAELATQF YINPATSQPN VSGLILAGSA DFKTELSQSE LFDPRLQAKI LNVVDVSYGG ENGFNQAIEL SAEILSNVKF IQEKKLIGKY FEEISQDTGK
301: YVFGVEDTLK ALEMGAVETL IVWENLDINR YELKNNTTGE IVIKHLGKDQ ENNQSNFHDA ETNAELEVQE KMPLLEWFAN EYKRFGCTLE FVTNKSQEGS
401: QFCRGFGGIG GLLRYQLDMR TFDELSDGEV YEDSD

Arabidopsis Description

ERF1-3ERF1-3 [Source:UniProtKB/TrEMBL;Acc:A0A178VIS2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.