CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

cytosol 2
mitochondrion 5
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG98876
KRH14452
KRH46090
KRH73702

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G12920.1	KRG98876	AT3G58750.1	21798944
AT1G12920.1	KRH14452	AT3G58750.1	21798944
AT1G12920.1	KRH46090	AT3G58750.1	21798944
AT1G12920.1	KRH73702	AT3G58750.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P09990_001	Banana	cytosol	18.7	82.14
KRH70101	Soybean	cytosol	96.21	81.24
KRH08442	Soybean	cytosol, nucleus	94.31	79.82
EER99630	Sorghum	cytosol	92.14	77.8
Os07t0587400-01	Rice	cytosol	91.6	77.35
EER93602	Sorghum	cytosol	91.6	77.35
AT3G26618.1	Thale cress	cytosol	91.06	77.24
Os03t0702800-01	Rice	cytosol, plasma membrane	91.33	77.12
TraesCS2A01G192900.1	Wheat	cytosol	90.51	76.43
TraesCS2B01G213800.1	Wheat	cytosol	90.24	76.2
AT1G12920.1	Thale cress	cytosol	89.16	75.81
TraesCS4A01G273100.1	Wheat	cytosol	89.43	75.51
TraesCS4B01G040900.1	Wheat	cytosol	89.43	75.51
TraesCS4D01G038300.1	Wheat	cytosol	89.43	75.51
PGSC0003DMT400060405	Potato	cytosol	89.43	75.51
KRG94758	Soybean	cytosol, endoplasmic reticulum	71.0	75.5
Solyc11g006660.1.1	Tomato	nucleus	89.16	75.29
Solyc05g055210.1.1	Tomato	plastid	89.16	75.29
KRH09439	Soybean	cytosol	89.16	75.29
PGSC0003DMT400019675	Potato	cytosol	89.16	75.29
GSMUA_Achr10P...	Banana	cytosol	18.16	75.28
KRH38906	Soybean	endoplasmic reticulum	89.97	73.61
GSMUA_Achr8P09860_001	Banana	cytosol	60.98	72.82
GSMUA_Achr10P...	Banana	cytosol	53.93	70.07
CDX98026	Canola	cytosol	22.22	58.57
GSMUA_Achr11P...	Banana	cytosol, mitochondrion	83.2	55.92
HORVU3Hr1G060530.4	Barley	cytosol	34.42	52.26
Zm00001d021144_P001	Maize	cytosol	21.41	44.38
Bra019799.1-P	Field mustard	cytosol	9.76	34.95

Protein Annotations

MapMan:17.3.2.1.1	Gene3D:3.30.1330.30	Gene3D:3.30.420.60	Gene3D:3.30.960.10	UniProt:A0A0R0FLB4	EMBL:ACUP02009871
EnsemblPlantsGene:GLYMA_16G044500	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003747	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006412	GO:GO:0006415
GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043
GO:GO:0019538	InterPro:IPR024049	InterPro:IPR029064	EnsemblPlants:KRH06769	ProteinID:KRH06769	ProteinID:KRH06769.1
InterPro:L30e-like	PFAM:PF03463	PFAM:PF03464	PFAM:PF03465	PANTHER:PTHR10113	PANTHER:PTHR10113:SF19
InterPro:Peptide_chain-rel_eRF1/aRF1	InterPro:Release_factor_eRF1/aRF1_N	SMART:SM01194	SUPFAM:SSF53137	SUPFAM:SSF55315	SUPFAM:SSF55481
TIGRFAMs:TIGR03676	UniParc:UPI0006ED9A20	InterPro:eRF1_1_Pelota	InterPro:eRF1_2	InterPro:eRF1_3	SEG:seg

Description

hypothetical protein

Coordinates

chr16:+:4224380..4227731

Molecular Weight (calculated)

41589.3 Da

IEP (calculated)

4.842

GRAVY (calculated)

-0.376

Length

369 amino acids

Sequence
(BLAST)

001: MVLGAITSTQ QRLRLYNKVP PNGLVLYTGT IITEDGKEKK VTIDFEPFKP INASLYLCDN KFHTEALNEL LESDDKFGFI IMDGNGTLFG TLTGNTREVL
101: HKFTVDLPKK HGRGGQSALR FARLRMEKWH NYVRKTAELA TQFFINPATS QPNVSGLILA GSADFKTELS QSDMFDPRLQ AKILNVVDVS YGGENGFNQA
201: IELSAEMLSN VKFIQEKRLI GKYFEEISQD TGKYVFGVED TLKALEMGAV ETLIVWENLD INRYVLKNSS TGEIVIKHLN KYQEANQSNF RDSATSAELE
301: VQEKMPLLEW FASEYKKFGC SLEFVTNKSQ EGSQFCRGFG GIGGTLRYQL DIRSFDELSD DGEVYEDSD

Best Arabidopsis Sequence Match ( AT1G12920.1 )
(BLAST)

001: MAEEADTNIE IWKIKKLIKG LESARGNGTS MISLIMPPRD QVSRVTKMLG DEYGTASNIK SRVNRQSVLS AITSAQQRLK LYNKVPTNGL VLYTGTIVND
101: DGKEKKVTFD FEPFRPINAS LYLCDNKFHT EALNELLESD DKFGFIVMDG NGTLFGTLSG NTREVLHKFT VDLPKKHGRG GQSALRFARL RMEKRHNYVR
201: KTAELATQFY INPATSQPNV SGLILAGSAD FKTELSQSEL FDPRLQAKIL NVVDVSYGGE NGFNQAIELS AEILSNVKFI QEKKLIGKYF EEISQDTGKY
301: VFGVEDTLKA LEMGAIETLI VWENLDINRY ELKNSTTGEM VVKHFGKDQE SDTSNFHDSE TNAELEVQEK MPLLEWFANE YKRFGCTLEF VTNKSQEGSQ
401: FCRGFGGIGG MLRYQLDMRT FDELSDTEVY EDSD

Arabidopsis Description

ERF1-2Eukaryotic peptide chain release factor subunit 1-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPV8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.