Factsheet for Solyc05g055210.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 5
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117
nucleus: 25464976
plastid: 26371478

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc07g055840.2.1
Solyc12g011000.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G12920.1	Solyc07g055840.2.1	AT3G58750.1	21798944
AT1G12920.1	Solyc12g011000.1.1	AT3G58750.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400060405	Potato	cytosol	99.54	99.54
Solyc11g006660.1.1	Tomato	nucleus	96.57	96.57
KRH70101	Soybean	cytosol	90.16	90.16
GSMUA_Achr10P...	Banana	cytosol	58.58	90.14
KRH08442	Soybean	cytosol, nucleus	89.47	89.68
KRH06769	Soybean	mitochondrion	75.29	89.16
Os03t0702800-01	Rice	cytosol, plasma membrane	88.56	88.56
Solyc12g010520.1.1	Tomato	nucleus	81.69	88.15
GSMUA_Achr8P09860_001	Banana	cytosol	62.24	88.03
EER93602	Sorghum	cytosol	87.87	87.87
AT3G26618.1	Thale cress	cytosol	87.41	87.82
TraesCS2A01G192900.1	Wheat	cytosol	87.64	87.64
TraesCS2B01G213800.1	Wheat	cytosol	87.41	87.41
Os07t0587400-01	Rice	cytosol	87.41	87.41
EER99630	Sorghum	cytosol	86.96	86.96
Solyc07g006130.1.1	Tomato	cytosol, nucleus	80.32	86.67
AT1G12920.1	Thale cress	cytosol	86.04	86.64
TraesCS4D01G038300.1	Wheat	cytosol	85.58	85.58
TraesCS4B01G040900.1	Wheat	cytosol	85.58	85.58
TraesCS4A01G273100.1	Wheat	cytosol	85.58	85.58
KRG94758	Soybean	cytosol, endoplasmic reticulum	66.59	83.86
GSMUA_Achr6P09990_001	Banana	cytosol	15.33	79.76
GSMUA_Achr10P...	Banana	cytosol	14.42	70.79
GSMUA_Achr11P...	Banana	cytosol, mitochondrion	80.78	64.3
CDX98026	Canola	cytosol	18.08	56.43
HORVU3Hr1G060530.4	Barley	cytosol	29.06	52.26
Zm00001d021144_P001	Maize	cytosol	20.82	51.12
Bra019799.1-P	Field mustard	cytosol	7.32	31.07

Protein Annotations

MapMan:17.3.2.1.1	Gene3D:3.30.1330.30	Gene3D:3.30.420.60	Gene3D:3.30.960.10	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003747	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006412	GO:GO:0006415	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0019538	InterPro:IPR024049	InterPro:IPR029064
UniProt:K4C2J8	InterPro:L30e-like	PFAM:PF03463	PFAM:PF03464	PFAM:PF03465	PANTHER:PTHR10113
PANTHER:PTHR10113:SF19	InterPro:Peptide_chain-rel_eRF1/aRF1	InterPro:Release_factor_eRF1/aRF1_N	SMART:SM01194	SUPFAM:SSF53137	SUPFAM:SSF55315
SUPFAM:SSF55481	EnsemblPlantsGene:Solyc05g055210.1	EnsemblPlants:Solyc05g055210.1.1	TIGRFAMs:TIGR03676	UniParc:UPI000276707B	InterPro:eRF1_1_Pelota
InterPro:eRF1_2	InterPro:eRF1_3	:	:	:	:

Description

No Description!

Coordinates

chr5:+:64954323..64955636

Molecular Weight (calculated)

48918.2 Da

IEP (calculated)

5.264

GRAVY (calculated)

-0.386

Length

437 amino acids

Sequence
(BLAST)

001: MADGQENDKN IEIWKMKKLI KALQSARGNG TSMISLIIPP GDQISRITKM LAEEYGTASN IKSRVNRQSV LGAITSAQQR LKLYNKVPPN GLLLYTGTIV
101: TDDGKEKKVT FDLTPFKPIN ASLYLCDNKF HTEPLGELLE SDEKFGFIVM DGNGTLFGTL SGNTREVLHK FTVDLPKKHG RGGQSALRFA RLRMEKRHNY
201: VRKTAELATQ FFINPATSQP NVSGLILAGS ADFKTELSQS DMFDPRLQAK ILNVVDVSYG GENGFNQAIE LSAEILANVK FIQEKRLIGK FFEEISQDTG
301: KYVFGVDDTI KGLEMGAVET LIVWENLDIN RYVLKNSVTN EIVIKHLNKE QEADNSNFKD SATSAELEVQ DKMPLLEWFA NEYKTFGCSL EFVTNRSQEG
401: SQFCRGFGGI GGILRYQLDM RSFDEPSDEG EYFVDSD

Best Arabidopsis Sequence Match ( AT3G26618.1 )
(BLAST)

001: MADQESDKNI EIWKIKKLIK GLETARGNGT SMISLIMPPR DQVARVTKML ADEYGTASNI KSRVNRQSVL SAITSAQQRL KLYNKVPPNG LVLYTGTIVT
101: DDGKEKKVTI DFEPFKPINA SLYLCDNKFH TEPLNELLES DDKFGFIVMD GNGTLFGTLS GNTREVLHKF TVDLPKKHGR GGQSALRFAR LRMEKRHNYV
201: RKTAELATQF YINPATSQPN VSGLILAGSA DFKTELSQSE LFDPRLQAKI LNVVDVSYGG ENGFNQAIEL SAEILSNVKF IQEKKLIGKY FEEISQDTGK
301: YVFGVEDTLK ALEMGAVETL IVWENLDINR YELKNNTTGE IVIKHLGKDQ ENNQSNFHDA ETNAELEVQE KMPLLEWFAN EYKRFGCTLE FVTNKSQEGS
401: QFCRGFGGIG GLLRYQLDMR TFDELSDGEV YEDSD

Arabidopsis Description

ERF1-3ERF1-3 [Source:UniProtKB/TrEMBL;Acc:A0A178VIS2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.