Factsheet for Os03t0702800-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, plasma membrane

Predictor Summary:

cytosol 5
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0232400-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G12920.1	Os02t0232400-01	AT3G58750.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d013481_P001	Maize	cytosol, extracellular	97.71	97.71
EER93602	Sorghum	cytosol	97.48	97.48
Os07t0587400-01	Rice	cytosol	94.74	94.74
TraesCS4D01G038300.1	Wheat	cytosol	94.28	94.28
TraesCS4B01G040900.1	Wheat	cytosol	94.28	94.28
TraesCS4A01G273100.1	Wheat	cytosol	94.28	94.28
GSMUA_Achr10P...	Banana	cytosol	61.1	94.01
GSMUA_Achr8P09860_001	Banana	cytosol	66.36	93.85
KRH70101	Soybean	cytosol	93.82	93.82
KRH08442	Soybean	cytosol, nucleus	93.14	93.35
Solyc12g010520.1.1	Tomato	nucleus	86.5	93.33
HORVU4Hr1G006500.2	Barley	cytosol	94.28	93.21
PGSC0003DMT400020395	Potato	cytosol	92.91	92.91
Solyc07g006130.1.1	Tomato	cytosol, nucleus	86.04	92.84
VIT_18s0041g00730.t01	Wine grape	cytosol	92.45	92.45
PGSC0003DMT400029003	Potato	cytosol	91.53	91.53
PGSC0003DMT400028999	Potato	cytosol	91.53	91.53
KRH06769	Soybean	mitochondrion	77.12	91.33
CDY00188	Canola	cytosol	90.85	91.26
AT3G26618.1	Thale cress	cytosol	90.62	91.03
Bra034244.1-P	Field mustard	cytosol	90.39	90.8
CDY56364	Canola	cytosol	90.39	90.8
KRH09439	Soybean	cytosol	90.62	90.62
AT1G12920.1	Thale cress	cytosol	89.47	90.09
VIT_18s0072g01010.t01	Wine grape	cytosol	89.93	89.93
Bra016748.1-P	Field mustard	cytosol	89.47	89.89
CDY21074	Canola	cytosol	89.47	89.89
KRH38906	Soybean	endoplasmic reticulum	92.22	89.36
PGSC0003DMT400019675	Potato	cytosol	88.56	88.56
Solyc05g055210.1.1	Tomato	plastid	88.56	88.56
PGSC0003DMT400060405	Potato	cytosol	88.56	88.56
Solyc11g006660.1.1	Tomato	nucleus	88.33	88.33
CDY34600	Canola	cytosol	33.64	88.02
KRG94758	Soybean	cytosol, endoplasmic reticulum	69.34	87.32
Os01t0939500-00	Rice	cytosol	86.96	87.16
VIT_18s0001g12240.t01	Wine grape	mitochondrion	92.22	86.11
GSMUA_Achr6P09990_001	Banana	cytosol	16.25	84.52
CDY19410	Canola	cytosol	29.98	81.88
Os05t0373900-01	Rice	cytosol, plasma membrane	80.78	80.23
GSMUA_Achr10P...	Banana	cytosol	15.33	75.28
GSMUA_Achr11P...	Banana	cytosol, mitochondrion	85.58	68.12

Protein Annotations

MapMan:17.3.2.1.1	Gene3D:3.30.1330.30	Gene3D:3.30.420.60	Gene3D:3.30.960.10	EntrezGene:4333840	ProteinID:AAS07262.1
ProteinID:AAX95517.1	ProteinID:ABF98421.1	EMBL:AK121869	ProteinID:BAF12926.1	ProteinID:BAS85951.1	ProteinID:EAZ28285.1
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003747	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006412	GO:GO:0006415	GO:GO:0008135
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0019538
InterPro:IPR024049	InterPro:IPR029064	InterPro:L30e-like	EnsemblPlantsGene:Os03g0702800	EnsemblPlants:Os03t0702800-01	PFAM:PF03463
PFAM:PF03464	PFAM:PF03465	PANTHER:PTHR10113	PANTHER:PTHR10113:SF13	InterPro:Peptide_chain-rel_eRF1/aRF1	UniProt:Q75I90
InterPro:Release_factor_eRF1/aRF1_N	SMART:SM01194	SUPFAM:SSF53137	SUPFAM:SSF55315	SUPFAM:SSF55481	TIGRFAMs:TIGR03676
UniParc:UPI00002394F8	RefSeq:XP_015630898.1	RefSeq:XP_015630899.1	RefSeq:XP_015630900.1	InterPro:eRF1_1_Pelota	InterPro:eRF1_2
InterPro:eRF1_3	:	:	:	:	:

Description

Similar to Eukaryotic peptide chain release factor subunit 1 (eRF1) (Eukaryotic release factor 1) (TB3-1) (Cl1 protein). (Os03t0702800-01);Similar to Eukaryotic peptide chain release factor subunit 1 (eRF1) (Eukaryotic release factor 1) (TB3-1) (Cl1 protein). (Os03t0702800-02)

Coordinates

chr3:+:28236193..28239337

Molecular Weight (calculated)

49000.0 Da

IEP (calculated)

5.167

GRAVY (calculated)

-0.449

Length

437 amino acids

Sequence
(BLAST)

001: MSDGQETDKN IEIWKIKKLI KALESARGNG TSMISLIMPP RDQVSRVTKM LGDEYGTASN IKSRVNRQSV LAAITSAQQR LKLYNKVPPN GLVLYTGTIV
101: TEDGKEKKVT IDFEPFKPIN ASLYLCDNKF HTEALNELLE SDDKFGFIVM DGNGTLFGTL SGNTREILHK FTVDLPKKHG RGGQSALRFA RLRMEKRHNY
201: VRKTAELATQ FFINPATSQP NVSGLILAGS ADFKTELSQS DMFDQRLQAK ILNVVDVSYG GENGFNQAIE LSAEILANVK FIQEKKLIGK YFEEISQDTG
301: KYVFGVDDTL KTLEMGAVET LIVWENLDVN RYVLKNSATG ETAIKHLNKE QEADQSNFRD TSTNAELEVQ DKTSLLEWFA NEYKKFGCTL EFVTNKSQEG
401: SQFCRGFGGI GGILRYQLDI RSFDELSDDE GVYEDSD

Best Arabidopsis Sequence Match ( AT3G26618.1 )
(BLAST)

001: MADQESDKNI EIWKIKKLIK GLETARGNGT SMISLIMPPR DQVARVTKML ADEYGTASNI KSRVNRQSVL SAITSAQQRL KLYNKVPPNG LVLYTGTIVT
101: DDGKEKKVTI DFEPFKPINA SLYLCDNKFH TEPLNELLES DDKFGFIVMD GNGTLFGTLS GNTREVLHKF TVDLPKKHGR GGQSALRFAR LRMEKRHNYV
201: RKTAELATQF YINPATSQPN VSGLILAGSA DFKTELSQSE LFDPRLQAKI LNVVDVSYGG ENGFNQAIEL SAEILSNVKF IQEKKLIGKY FEEISQDTGK
301: YVFGVEDTLK ALEMGAVETL IVWENLDINR YELKNNTTGE IVIKHLGKDQ ENNQSNFHDA ETNAELEVQE KMPLLEWFAN EYKRFGCTLE FVTNKSQEGS
401: QFCRGFGGIG GLLRYQLDMR TFDELSDGEV YEDSD

Arabidopsis Description

ERF1-3ERF1-3 [Source:UniProtKB/TrEMBL;Acc:A0A178VIS2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.