CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX67764
CDX71925
CDX98329
CDY49252

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G12920.1	CDX67764	AT3G58750.1	21798944
AT1G12920.1	CDX71925	AT3G58750.1	21798944
AT1G12920.1	CDX98329	AT3G58750.1	21798944
AT1G12920.1	CDY49252	AT3G58750.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX98026	Canola	cytosol	37.72	45.0
Bra016748.1-P	Field mustard	cytosol	100.0	38.39
CDY21074	Canola	cytosol	100.0	38.39
AT1G12920.1	Thale cress	cytosol	96.41	37.1
CDY56364	Canola	cytosol	92.81	35.63
CDY00188	Canola	cytosol	92.22	35.4
Zm00001d006725_P001	Maize	cytosol, extracellular	88.62	33.87
EER99630	Sorghum	cytosol	88.62	33.87
Zm00001d013481_P001	Maize	cytosol, extracellular	88.02	33.64
TraesCS2A01G192900.1	Wheat	cytosol	88.02	33.64
Os03t0702800-01	Rice	cytosol, plasma membrane	88.02	33.64
EER93602	Sorghum	cytosol	88.02	33.64
TraesCS2B01G213800.1	Wheat	cytosol	87.43	33.41
Os07t0587400-01	Rice	cytosol	85.63	32.72
TraesCS4A01G273100.1	Wheat	cytosol	85.63	32.72
TraesCS4B01G040900.1	Wheat	cytosol	85.63	32.72
TraesCS4D01G038300.1	Wheat	cytosol	85.63	32.72
HORVU4Hr1G006500.2	Barley	cytosol	86.23	32.58
CDX85313	Canola	cytosol	82.04	31.57
CDX86338	Canola	cytosol	81.44	31.34
HORVU2Hr1G035400.1	Barley	cytosol	86.23	30.38
CDY35766	Canola	cytosol	71.86	28.71
CDY19410	Canola	cytosol	24.55	25.62
CDY14497	Canola	cytosol	22.16	21.26
CDY45916	Canola	cytosol	20.96	13.46

Protein Annotations

Gene3D:3.30.1330.30	Gene3D:3.30.960.10	MapMan:35.1	GO:A0A078H7W3	UniProt:A0A078H7W3	EnsemblPlants:CDY34600
ProteinID:CDY34600	ProteinID:CDY34600.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003747
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006412
GO:GO:0006415	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016043	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00057046001	InterPro:IPR024049	InterPro:IPR029064	InterPro:L30e-like
PFAM:PF03463	PFAM:PF03465	PANTHER:PTHR10113	PANTHER:PTHR10113:SF14	InterPro:Peptide_chain-rel_eRF1/aRF1	InterPro:Release_factor_eRF1/aRF1_N
SMART:SM01194	SUPFAM:SSF53137	SUPFAM:SSF55315	SUPFAM:SSF55481	UniParc:UPI0004EE5DB8	InterPro:eRF1_1_Pelota
InterPro:eRF1_3	:	:	:	:	:

Description

BnaC03g57000DBnaC03g57000D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H7W3]

Coordinates

chrLK032337:+:399002..400759

Molecular Weight (calculated)

18596.0 Da

IEP (calculated)

4.297

GRAVY (calculated)

-0.385

Length

167 amino acids

Sequence
(BLAST)

001: MADQEADTNI EIWKIKKLIK GLESARGNGT SMISLIMPPR DQVSRVTKML GDEYGTASNI KSRVNRQSPN VAGLILAGSA DFKTELSQSE LFDPRLQAKI
101: LNVDTGKYVF GVEDTLKALE MGAIETLIVW ENLDINRYEL KNSTSGEILD MRTFDELSDG EVYEDSD

Best Arabidopsis Sequence Match ( AT1G12920.1 )
(BLAST)

001: MAEEADTNIE IWKIKKLIKG LESARGNGTS MISLIMPPRD QVSRVTKMLG DEYGTASNIK SRVNRQSVLS AITSAQQRLK LYNKVPTNGL VLYTGTIVND
101: DGKEKKVTFD FEPFRPINAS LYLCDNKFHT EALNELLESD DKFGFIVMDG NGTLFGTLSG NTREVLHKFT VDLPKKHGRG GQSALRFARL RMEKRHNYVR
201: KTAELATQFY INPATSQPNV SGLILAGSAD FKTELSQSEL FDPRLQAKIL NVVDVSYGGE NGFNQAIELS AEILSNVKFI QEKKLIGKYF EEISQDTGKY
301: VFGVEDTLKA LEMGAIETLI VWENLDINRY ELKNSTTGEM VVKHFGKDQE SDTSNFHDSE TNAELEVQEK MPLLEWFANE YKRFGCTLEF VTNKSQEGSQ
401: FCRGFGGIGG MLRYQLDMRT FDELSDTEVY EDSD

Arabidopsis Description

ERF1-2Eukaryotic peptide chain release factor subunit 1-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPV8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.