CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g006130.1.1	Tomato	cytosol, nucleus	60.34	25.93
CDX86338	Canola	cytosol	63.79	25.58
Solyc12g010520.1.1	Tomato	nucleus	59.2	25.43
CDX85313	Canola	cytosol	62.64	25.12
VIT_18s0041g00730.t01	Wine grape	cytosol	62.64	24.94
KRH09439	Soybean	cytosol	61.49	24.49
CDY00188	Canola	cytosol	60.92	24.37
VIT_18s0072g01010.t01	Wine grape	cytosol	60.34	24.03
PGSC0003DMT400029003	Potato	cytosol	60.34	24.03
PGSC0003DMT400028999	Potato	cytosol	60.34	24.03
CDY56364	Canola	cytosol	59.77	23.91
PGSC0003DMT400020395	Potato	cytosol	59.77	23.8
CDY19410	Canola	cytosol	21.84	23.75
KRH38906	Soybean	endoplasmic reticulum	60.92	23.5
CDY21074	Canola	cytosol	58.62	23.45
VIT_18s0001g12240.t01	Wine grape	mitochondrion	60.34	22.44
CDY34600	Canola	cytosol	21.26	22.16
CDX98026	Canola	cytosol	17.82	22.14
CDY35766	Canola	cytosol	52.87	22.01
CDY45916	Canola	cytosol	10.34	6.92
HORVU3Hr1G046830.1	Barley	mitochondrion	0.0	0.0

Protein Annotations

Gene3D:3.30.1330.30	Gene3D:3.30.420.60	MapMan:35.1	GO:A0A078FNP8	UniProt:A0A078FNP8	EnsemblPlants:CDY14497
ProteinID:CDY14497	ProteinID:CDY14497.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003747
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006412
GO:GO:0006415	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016043	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00079185001	InterPro:IPR029064	InterPro:L30e-like	PFAM:PF03465
PANTHER:PTHR10113	PANTHER:PTHR10113:SF14	InterPro:Peptide_chain-rel_eRF1/aRF1	SUPFAM:SSF55315	UniParc:UPI0004EEEC3A	InterPro:eRF1_3

Description

BnaC03g20980DBnaC03g20980D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FNP8]

Coordinates

chrLK032043:-:757279..757803

Molecular Weight (calculated)

19824.7 Da

IEP (calculated)

4.786

GRAVY (calculated)

-0.295

Length

174 amino acids

Sequence
(BLAST)

001: MFDPRLETKI LKVVHVSLGG DYGFSRAIEM SSELLGGVRY IQEKRLIRRL FQELRLENGK YVIGVDDTLN TLGAIETLIV WQDLAINRYV LNNNATGETV
101: IRYMDSEQEG NEENFRDGNI ELVVMENTPL VEWLANEHKR FGCVLEFVTD NSNEGSQFRK GFGGIGGILR HNIN

Best Arabidopsis Sequence Match ( AT1G12920.1 )
(BLAST)

001: MAEEADTNIE IWKIKKLIKG LESARGNGTS MISLIMPPRD QVSRVTKMLG DEYGTASNIK SRVNRQSVLS AITSAQQRLK LYNKVPTNGL VLYTGTIVND
101: DGKEKKVTFD FEPFRPINAS LYLCDNKFHT EALNELLESD DKFGFIVMDG NGTLFGTLSG NTREVLHKFT VDLPKKHGRG GQSALRFARL RMEKRHNYVR
201: KTAELATQFY INPATSQPNV SGLILAGSAD FKTELSQSEL FDPRLQAKIL NVVDVSYGGE NGFNQAIELS AEILSNVKFI QEKKLIGKYF EEISQDTGKY
301: VFGVEDTLKA LEMGAIETLI VWENLDINRY ELKNSTTGEM VVKHFGKDQE SDTSNFHDSE TNAELEVQEK MPLLEWFANE YKRFGCTLEF VTNKSQEGSQ
401: FCRGFGGIGG MLRYQLDMRT FDELSDTEVY EDSD

Arabidopsis Description

ERF1-2Eukaryotic peptide chain release factor subunit 1-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPV8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.