Factsheet for VIT_18s0072g01010.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_06s0080g00770.t01
VIT_12s0142g00610.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G12920.1	VIT_06s0080g00770.t01	AT3G58750.1	21798944
AT1G12920.1	VIT_12s0142g00610.t01	AT3G58750.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_18s0041g00730.t01	Wine grape	cytosol	94.74	94.74
EER93602	Sorghum	cytosol	91.3	91.3
KRH09439	Soybean	cytosol	90.62	90.62
Solyc12g010520.1.1	Tomato	nucleus	83.52	90.12
PGSC0003DMT400028999	Potato	cytosol	89.93	89.93
PGSC0003DMT400029003	Potato	cytosol	89.93	89.93
Os07t0587400-01	Rice	cytosol	89.93	89.93
Os03t0702800-01	Rice	cytosol, plasma membrane	89.93	89.93
EER99630	Sorghum	cytosol	89.93	89.93
Solyc07g006130.1.1	Tomato	cytosol, nucleus	83.3	89.88
PGSC0003DMT400020395	Potato	cytosol	89.7	89.7
TraesCS2A01G192900.1	Wheat	cytosol	89.7	89.7
TraesCS2B01G213800.1	Wheat	cytosol	89.47	89.47
AT3G26618.1	Thale cress	cytosol	88.79	89.2
VIT_18s0001g12240.t01	Wine grape	mitochondrion	94.97	88.68
AT1G12920.1	Thale cress	cytosol	87.87	88.48
KRH38906	Soybean	endoplasmic reticulum	91.3	88.47
TraesCS4A01G273100.1	Wheat	cytosol	88.1	88.1
TraesCS4B01G040900.1	Wheat	cytosol	88.1	88.1
TraesCS4D01G038300.1	Wheat	cytosol	88.1	88.1
CDY14497	Canola	cytosol	24.03	60.34
HORVU3Hr1G046830.1	Barley	mitochondrion	9.84	53.09

Protein Annotations

EntrezGene:100267567	wikigene:100267567	MapMan:17.3.2.1.1	Gene3D:3.30.1330.30	Gene3D:3.30.420.60	Gene3D:3.30.960.10
ProteinID:CCB44847	ProteinID:CCB44847.1	UniProt:F6GY09	EMBL:FN594968	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003747	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006412	GO:GO:0006415	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0019538	InterPro:IPR024049	InterPro:IPR029064
InterPro:L30e-like	EntrezGene:LOC100267567	wikigene:LOC100267567	PFAM:PF03463	PFAM:PF03464	PFAM:PF03465
PANTHER:PTHR10113	PANTHER:PTHR10113:SF19	InterPro:Peptide_chain-rel_eRF1/aRF1	InterPro:Release_factor_eRF1/aRF1_N	SMART:SM01194	SUPFAM:SSF53137
SUPFAM:SSF55315	SUPFAM:SSF55481	TIGRFAMs:TIGR03676	UniParc:UPI00015CB4C3	ArrayExpress:VIT_18s0072g01010	EnsemblPlantsGene:VIT_18s0072g01010
EnsemblPlants:VIT_18s0072g01010.t01	RefSeq:XP_002271457	RefSeq:XP_002271457.1	InterPro:eRF1_1_Pelota	InterPro:eRF1_2	InterPro:eRF1_3
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr18:-:20461704..20464190

Molecular Weight (calculated)

49207.5 Da

IEP (calculated)

5.273

GRAVY (calculated)

-0.418

Length

437 amino acids

Sequence
(BLAST)

001: MADAHETDKN IEIWKIKKLI KALEAARGNG TSMISLVMPP RDQISRVTKM LGDEFGTASN IKSRVNRQSV LGAITSAQQR LKLYNKVPPN GLVLYTGTIV
101: TEDGKDKKVT IDFEPFRPIN ASLYLCDNKF HTEDMNELLE SDDKFGFIVM DGNGTLFGTL SGNTREVLHK FTVDLPKKHG RGGQSALRFA RLRMEKRHNY
201: VRKTAELATQ FFINPATSQP NVAGLILAGS ADFKTELSQS DMFDPRLQAK LLNVVDVSYG GENGFNQAIE LSSEILSNVK FIQEKRLIGK YFEEISRDTG
301: KYVFGVDDTL KALEMGAVEI LIMWENLDIN RYVLNNSNTT EIVIKHLNKE QATDQSNFRD SATSAELEVQ EKMSLLEWFA NEYKRFGCAL EFVTNKSQEG
401: SQFCRGFGGI GGILRYQLDM RLFDEVSDDG ENYEDSD

Best Arabidopsis Sequence Match ( AT3G26618.1 )
(BLAST)

001: MADQESDKNI EIWKIKKLIK GLETARGNGT SMISLIMPPR DQVARVTKML ADEYGTASNI KSRVNRQSVL SAITSAQQRL KLYNKVPPNG LVLYTGTIVT
101: DDGKEKKVTI DFEPFKPINA SLYLCDNKFH TEPLNELLES DDKFGFIVMD GNGTLFGTLS GNTREVLHKF TVDLPKKHGR GGQSALRFAR LRMEKRHNYV
201: RKTAELATQF YINPATSQPN VSGLILAGSA DFKTELSQSE LFDPRLQAKI LNVVDVSYGG ENGFNQAIEL SAEILSNVKF IQEKKLIGKY FEEISQDTGK
301: YVFGVEDTLK ALEMGAVETL IVWENLDINR YELKNNTTGE IVIKHLGKDQ ENNQSNFHDA ETNAELEVQE KMPLLEWFAN EYKRFGCTLE FVTNKSQEGS
401: QFCRGFGGIG GLLRYQLDMR TFDELSDGEV YEDSD

Arabidopsis Description

ERF1-3ERF1-3 [Source:UniProtKB/TrEMBL;Acc:A0A178VIS2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.