CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

cytosol 3
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	cytosol
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

nucleus: 21132161
endoplasmic reticulum: 27224218

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG98876
KRH14452
KRH46090
KRH73702

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G12920.1	KRG98876	AT3G58750.1	21798944
AT1G12920.1	KRH14452	AT3G58750.1	21798944
AT1G12920.1	KRH46090	AT3G58750.1	21798944
AT1G12920.1	KRH73702	AT3G58750.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH09439	Soybean	cytosol	95.12	98.17
VIT_18s0041g00730.t01	Wine grape	cytosol	90.91	93.82
EER93602	Sorghum	cytosol	90.47	93.36
Solyc12g010520.1.1	Tomato	nucleus	83.37	92.84
KRH70101	Soybean	cytosol	89.8	92.68
Solyc07g006130.1.1	Tomato	cytosol, nucleus	83.15	92.59
Os03t0702800-01	Rice	cytosol, plasma membrane	89.36	92.22
PGSC0003DMT400020395	Potato	cytosol	89.36	92.22
KRH08442	Soybean	cytosol, nucleus	89.14	92.2
PGSC0003DMT400029003	Potato	cytosol	89.14	91.99
PGSC0003DMT400028999	Potato	cytosol	89.14	91.99
Os07t0587400-01	Rice	cytosol	88.69	91.53
VIT_18s0072g01010.t01	Wine grape	cytosol	88.47	91.3
TraesCS4D01G038300.1	Wheat	cytosol	88.47	91.3
TraesCS4B01G040900.1	Wheat	cytosol	88.47	91.3
TraesCS4A01G273100.1	Wheat	cytosol	88.25	91.08
TraesCS2B01G213800.1	Wheat	cytosol	88.03	90.85
EER99630	Sorghum	cytosol	88.03	90.85
TraesCS2A01G192900.1	Wheat	cytosol	87.8	90.62
AT3G26618.1	Thale cress	cytosol	86.92	90.11
KRH06769	Soybean	mitochondrion	73.61	89.97
AT1G12920.1	Thale cress	cytosol	86.25	89.63
VIT_18s0001g12240.t01	Wine grape	mitochondrion	91.57	88.25
KRG94758	Soybean	cytosol, endoplasmic reticulum	66.08	85.88
CDY14497	Canola	cytosol	23.5	60.92
HORVU3Hr1G046830.1	Barley	mitochondrion	9.31	51.85

Protein Annotations

MapMan:17.3.2.1.1	Gene3D:3.30.1330.30	Gene3D:3.30.420.60	Gene3D:3.30.960.10	UniProt:A0A0R0I9D1	EMBL:ACUP02005890
EnsemblPlantsGene:GLYMA_09G166000	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003747	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006412	GO:GO:0006415
GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043
GO:GO:0019538	InterPro:IPR024049	InterPro:IPR029064	EnsemblPlants:KRH38906	ProteinID:KRH38906	ProteinID:KRH38906.1
InterPro:L30e-like	PFAM:PF03463	PFAM:PF03464	PFAM:PF03465	PANTHER:PTHR10113	PANTHER:PTHR10113:SF19
InterPro:Peptide_chain-rel_eRF1/aRF1	InterPro:Release_factor_eRF1/aRF1_N	SMART:SM01194	SUPFAM:SSF53137	SUPFAM:SSF55315	SUPFAM:SSF55481
TIGRFAMs:TIGR03676	UniParc:UPI0006ED6EDD	InterPro:eRF1_1_Pelota	InterPro:eRF1_2	InterPro:eRF1_3	SEG:seg

Description

hypothetical protein

Coordinates

chr9:-:38993031..38996561

Molecular Weight (calculated)

50721.4 Da

IEP (calculated)

5.584

GRAVY (calculated)

-0.390

Length

451 amino acids

Sequence
(BLAST)

001: MNGLIRLLAY YCLKMVDGHE TDKNIEVWKI KKLIKALEAA RGNGTSMISL IMPPRDQISR VTKMLGDEFG TASNIKSRVN RQSVLGAITS AQQRLKLYNK
101: VPPNGLVLYT GTIVTDDGKE KKVTIDFEPF RPINASLYLC DNKFHTEALN ELLESDDKFG FIVMDGNGTL FGTLSGNTRE VLHKFSVDLP KKHGRGGQSA
201: LRFARLRMEK RHNYVRKTAE LATQFYINPA TSQPNVSGLI LAGSADFKTE LSQSDMFDPR LQAKILNVVD VSYGGENGFN QAIELSAEIL SNVKFIQEKR
301: LIGKYFEEIS QDTGKYVFGV DDTLKALEMG AVETLIVWEN LDMNRYVLKN SATGEVVIKH LNKEQDADQS NFRDPESNAD FEVQEKLSLL EWFANEYKRF
401: GCTLEFVTNK SQEGSQFCRG FGGIGGILRY QLDMRSFDDF SDDGGVYDDS E

Best Arabidopsis Sequence Match ( AT3G26618.1 )
(BLAST)

001: MADQESDKNI EIWKIKKLIK GLETARGNGT SMISLIMPPR DQVARVTKML ADEYGTASNI KSRVNRQSVL SAITSAQQRL KLYNKVPPNG LVLYTGTIVT
101: DDGKEKKVTI DFEPFKPINA SLYLCDNKFH TEPLNELLES DDKFGFIVMD GNGTLFGTLS GNTREVLHKF TVDLPKKHGR GGQSALRFAR LRMEKRHNYV
201: RKTAELATQF YINPATSQPN VSGLILAGSA DFKTELSQSE LFDPRLQAKI LNVVDVSYGG ENGFNQAIEL SAEILSNVKF IQEKKLIGKY FEEISQDTGK
301: YVFGVEDTLK ALEMGAVETL IVWENLDINR YELKNNTTGE IVIKHLGKDQ ENNQSNFHDA ETNAELEVQE KMPLLEWFAN EYKRFGCTLE FVTNKSQEGS
401: QFCRGFGGIG GLLRYQLDMR TFDELSDGEV YEDSD

Arabidopsis Description

ERF1-3ERF1-3 [Source:UniProtKB/TrEMBL;Acc:A0A178VIS2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.