Factsheet for Solyc12g010520.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 5
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 25464976
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc07g055840.2.1
Solyc12g011000.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G12920.1	Solyc07g055840.2.1	AT3G58750.1	21798944
AT1G12920.1	Solyc12g011000.1.1	AT3G58750.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g006130.1.1	Tomato	cytosol, nucleus	95.8	95.8
PGSC0003DMT400020395	Potato	cytosol	98.52	91.3
EER93602	Sorghum	cytosol	93.33	86.5
Os03t0702800-01	Rice	cytosol, plasma membrane	93.33	86.5
TraesCS2A01G192900.1	Wheat	cytosol	93.33	86.5
TraesCS2B01G213800.1	Wheat	cytosol	93.33	86.5
Os07t0587400-01	Rice	cytosol	93.09	86.27
EER99630	Sorghum	cytosol	92.59	85.81
VIT_18s0041g00730.t01	Wine grape	cytosol	92.1	85.35
AT1G12920.1	Thale cress	cytosol	91.36	85.25
AT3G26618.1	Thale cress	cytosol	91.36	85.06
KRH09439	Soybean	cytosol	91.6	84.9
TraesCS4D01G038300.1	Wheat	cytosol	91.6	84.9
TraesCS4B01G040900.1	Wheat	cytosol	91.6	84.9
TraesCS4A01G273100.1	Wheat	cytosol	91.36	84.67
VIT_18s0072g01010.t01	Wine grape	cytosol	90.12	83.52
KRH38906	Soybean	endoplasmic reticulum	92.84	83.37
Solyc05g055210.1.1	Tomato	plastid	88.15	81.69
Solyc11g006660.1.1	Tomato	nucleus	86.67	80.32
VIT_18s0001g12240.t01	Wine grape	mitochondrion	91.6	79.27
CDY14497	Canola	cytosol	25.43	59.2
HORVU3Hr1G046830.1	Barley	mitochondrion	10.12	50.62

Protein Annotations

MapMan:17.3.2.1.1	Gene3D:3.30.1330.30	Gene3D:3.30.420.60	Gene3D:3.30.960.10	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003747	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006412	GO:GO:0006415	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0019538	InterPro:IPR024049	InterPro:IPR029064
UniProt:K4DCD9	InterPro:L30e-like	PFAM:PF03463	PFAM:PF03464	PFAM:PF03465	PANTHER:PTHR10113
PANTHER:PTHR10113:SF19	InterPro:Peptide_chain-rel_eRF1/aRF1	InterPro:Release_factor_eRF1/aRF1_N	SMART:SM01194	SUPFAM:SSF53137	SUPFAM:SSF55315
SUPFAM:SSF55481	EnsemblPlantsGene:Solyc12g010520.1	EnsemblPlants:Solyc12g010520.1.1	TIGRFAMs:TIGR03676	UniParc:UPI0002769E64	InterPro:eRF1_1_Pelota
InterPro:eRF1_2	InterPro:eRF1_3	:	:	:	:

Description

No Description!

Coordinates

chr12:+:3517600..3518817

Molecular Weight (calculated)

45285.7 Da

IEP (calculated)

5.121

GRAVY (calculated)

-0.375

Length

405 amino acids

Sequence
(BLAST)

001: MISLIMPPRD QVSRVTKMLG DEFGTASNIK SRVNRQSVLG AITSAQQRLK LYNKVPPNGL VLYTGTIVTD DGKEKKVTID FEPFKPINAS LYLCDNKFHT
101: EALNELLESD DKFGFIVMDG NGTLFGTLSG NTREVLHKFS VDLPKKHGRG GQSALRFARL RMEKRHNYVR KTAELATQFY INPATSQPNV SGLILAGSAD
201: FKTELSQSDM FDPRLQAKIL NVVDVSYGGE NGFNQAIELS AEILANVKFI QEKKLIGKYF EEISQDTGKY VFGVDDTLKV LEMGAIETLI VWENLDITRY
301: VLKNSGSGET VVKHLNKGQE ADQSNFRDPA TNAELEVQEK LSLLEWFANE YRKFGCSLEF VTNKSQEGSQ FCRGFGGIGG LLRYQLDVRA FDELSDDGEV
401: YEDSD

Best Arabidopsis Sequence Match ( AT3G26618.1 )
(BLAST)

001: MADQESDKNI EIWKIKKLIK GLETARGNGT SMISLIMPPR DQVARVTKML ADEYGTASNI KSRVNRQSVL SAITSAQQRL KLYNKVPPNG LVLYTGTIVT
101: DDGKEKKVTI DFEPFKPINA SLYLCDNKFH TEPLNELLES DDKFGFIVMD GNGTLFGTLS GNTREVLHKF TVDLPKKHGR GGQSALRFAR LRMEKRHNYV
201: RKTAELATQF YINPATSQPN VSGLILAGSA DFKTELSQSE LFDPRLQAKI LNVVDVSYGG ENGFNQAIEL SAEILSNVKF IQEKKLIGKY FEEISQDTGK
301: YVFGVEDTLK ALEMGAVETL IVWENLDINR YELKNNTTGE IVIKHLGKDQ ENNQSNFHDA ETNAELEVQE KMPLLEWFAN EYKRFGCTLE FVTNKSQEGS
401: QFCRGFGGIG GLLRYQLDMR TFDELSDGEV YEDSD

Arabidopsis Description

ERF1-3ERF1-3 [Source:UniProtKB/TrEMBL;Acc:A0A178VIS2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.