Factsheet for VIT_18s0001g12240.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

cytosol 3
nucleus 2
mitochondrion 5
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_06s0080g00770.t01
VIT_12s0142g00610.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G12920.1	VIT_06s0080g00770.t01	AT3G58750.1	21798944
AT1G12920.1	VIT_12s0142g00610.t01	AT3G58750.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_18s0041g00730.t01	Wine grape	cytosol	90.38	96.8
VIT_18s0072g01010.t01	Wine grape	cytosol	88.68	94.97
EER93602	Sorghum	cytosol	87.61	93.82
KRH09439	Soybean	cytosol	86.75	92.91
Os03t0702800-01	Rice	cytosol, plasma membrane	86.11	92.22
EER99630	Sorghum	cytosol	85.68	91.76
Os07t0587400-01	Rice	cytosol	85.68	91.76
Solyc12g010520.1.1	Tomato	nucleus	79.27	91.6
KRH38906	Soybean	endoplasmic reticulum	88.25	91.57
PGSC0003DMT400020395	Potato	cytosol	85.26	91.3
Solyc07g006130.1.1	Tomato	cytosol, nucleus	78.85	91.11
PGSC0003DMT400028999	Potato	cytosol	85.04	91.08
PGSC0003DMT400029003	Potato	cytosol	85.04	91.08
AT3G26618.1	Thale cress	cytosol	84.4	90.8
TraesCS2A01G192900.1	Wheat	cytosol	84.62	90.62
TraesCS2B01G213800.1	Wheat	cytosol	84.4	90.39
AT1G12920.1	Thale cress	cytosol	83.76	90.32
TraesCS4A01G273100.1	Wheat	cytosol	84.19	90.16
TraesCS4B01G040900.1	Wheat	cytosol	84.19	90.16
TraesCS4D01G038300.1	Wheat	cytosol	84.19	90.16
CDY14497	Canola	cytosol	22.44	60.34
HORVU3Hr1G046830.1	Barley	mitochondrion	9.19	53.09

Protein Annotations

EntrezGene:100248954	wikigene:100248954	MapMan:17.3.2.1.1	Gene3D:3.30.1330.30	Gene3D:3.30.420.60	Gene3D:3.30.960.10
EMBL:AM468837	ProteinID:CAN77215	ProteinID:CAN77215.1	ProteinID:CCB45934	ProteinID:CCB45934.1	UniProt:F6H1H5
EMBL:FN595227	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003747	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006412	GO:GO:0006415
GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043
GO:GO:0019538	InterPro:IPR024049	InterPro:IPR029064	InterPro:L30e-like	EntrezGene:LOC100248954	wikigene:LOC100248954
PFAM:PF03463	PFAM:PF03464	PFAM:PF03465	PANTHER:PTHR10113	PANTHER:PTHR10113:SF19	InterPro:Peptide_chain-rel_eRF1/aRF1
InterPro:Release_factor_eRF1/aRF1_N	SMART:SM01194	SUPFAM:SSF53137	SUPFAM:SSF55315	SUPFAM:SSF55481	TIGR:TC51919
TIGR:TC66235	TIGRFAMs:TIGR03676	UniParc:UPI0002108CAD	ArrayExpress:VIT_18s0001g12240	EnsemblPlantsGene:VIT_18s0001g12240	EnsemblPlants:VIT_18s0001g12240.t01
RefSeq:XP_002283027	RefSeq:XP_002283027.1	RefSeq:XP_003634368	RefSeq:XP_003634368.1	InterPro:eRF1_1_Pelota	InterPro:eRF1_2
InterPro:eRF1_3	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr18:+:10428996..10433265

Molecular Weight (calculated)

52656.9 Da

IEP (calculated)

6.053

GRAVY (calculated)

-0.359

Length

468 amino acids

Sequence
(BLAST)

001: MGWIRITRLG RWLRIVAQVN QLASTVSTVL TMADGHETDK NIEIWKIKKL IKALEAARGN GTSMISLIMP PRDQISRVTK MLGDEFGTAS NIKSRVNRQS
101: VLGAITSAQQ RLKLYNKVPP NGLVLYTGTI VTEDGKEKKV TIDFEPFRPI NASLYLCDNK FHTEALNELL ESDDKFGFIV MDGNGTLFGT LSGNTREVLH
201: KFTVDLPKKH GRGGQSALRF ARLRMEKRHN YVRKTAELAT QFFINPATSQ PNVAGLILAG SADFKTELSQ SDMFDPRLQA KILNVVDVSY GGENGFNQAI
301: ELSSEILSNV KFIQEKRLIG KYFEEISQDT GKYVFGVEDT LKALEMGAVE ILIVWENLDM NRYVLKNSST GEIVIKHLNK EQEADQNTFR DSATSAELEV
401: QEKMSLLEWF ANEYKRFGCT LEFVTNKSQE GSQFCRGFGG IGGILRYQLD MRSFDELSDD GENYDDSE

Best Arabidopsis Sequence Match ( AT3G26618.1 )
(BLAST)

001: MADQESDKNI EIWKIKKLIK GLETARGNGT SMISLIMPPR DQVARVTKML ADEYGTASNI KSRVNRQSVL SAITSAQQRL KLYNKVPPNG LVLYTGTIVT
101: DDGKEKKVTI DFEPFKPINA SLYLCDNKFH TEPLNELLES DDKFGFIVMD GNGTLFGTLS GNTREVLHKF TVDLPKKHGR GGQSALRFAR LRMEKRHNYV
201: RKTAELATQF YINPATSQPN VSGLILAGSA DFKTELSQSE LFDPRLQAKI LNVVDVSYGG ENGFNQAIEL SAEILSNVKF IQEKKLIGKY FEEISQDTGK
301: YVFGVEDTLK ALEMGAVETL IVWENLDINR YELKNNTTGE IVIKHLGKDQ ENNQSNFHDA ETNAELEVQE KMPLLEWFAN EYKRFGCTLE FVTNKSQEGS
401: QFCRGFGGIG GLLRYQLDMR TFDELSDGEV YEDSD

Arabidopsis Description

ERF1-3ERF1-3 [Source:UniProtKB/TrEMBL;Acc:A0A178VIS2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.