Factsheet for TraesCS2B01G213800.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS5A01G413300.1
TraesCS5B01G416700.1
TraesCS5D01G422000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G12920.1	TraesCS5A01G413300.1	AT3G58750.1	21798944
AT1G12920.1	TraesCS5B01G416700.1	AT3G58750.1	21798944
AT1G12920.1	TraesCS5D01G422000.1	AT3G58750.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G192900.1	Wheat	cytosol	99.77	99.77
Os07t0587400-01	Rice	cytosol	94.28	94.28
Zm00001d006725_P001	Maize	cytosol, extracellular	94.05	94.05
EER99630	Sorghum	cytosol	94.05	94.05
GSMUA_Achr8P09860_001	Banana	cytosol	66.13	93.53
Solyc12g010520.1.1	Tomato	nucleus	86.5	93.33
TraesCS4B01G040900.1	Wheat	cytosol	92.45	92.45
PGSC0003DMT400020395	Potato	cytosol	92.45	92.45
KRH70101	Soybean	cytosol	91.99	91.99
GSMUA_Achr10P...	Banana	cytosol	59.73	91.9
KRH08442	Soybean	cytosol, nucleus	91.3	91.51
HORVU2Hr1G035400.1	Barley	cytosol	99.08	91.35
Solyc07g006130.1.1	Tomato	cytosol, nucleus	84.44	91.11
VIT_18s0041g00730.t01	Wine grape	cytosol	90.85	90.85
CDY00188	Canola	cytosol	90.16	90.57
AT1G12920.1	Thale cress	cytosol	89.93	90.55
AT3G26618.1	Thale cress	cytosol	89.93	90.34
Bra034244.1-P	Field mustard	cytosol	89.93	90.34
CDY56364	Canola	cytosol	89.93	90.34
KRH06769	Soybean	mitochondrion	76.2	90.24
Bra016748.1-P	Field mustard	cytosol	89.7	90.11
CDY21074	Canola	cytosol	89.7	90.11
PGSC0003DMT400028999	Potato	cytosol	89.7	89.7
PGSC0003DMT400029003	Potato	cytosol	89.7	89.7
KRH09439	Soybean	cytosol	89.47	89.47
VIT_18s0072g01010.t01	Wine grape	cytosol	89.47	89.47
KRH38906	Soybean	endoplasmic reticulum	90.85	88.03
CDY34600	Canola	cytosol	33.41	87.43
Solyc05g055210.1.1	Tomato	plastid	87.41	87.41
PGSC0003DMT400060405	Potato	cytosol	87.41	87.41
Solyc11g006660.1.1	Tomato	nucleus	86.73	86.73
PGSC0003DMT400019675	Potato	cytosol	86.73	86.73
KRG94758	Soybean	cytosol, endoplasmic reticulum	67.73	85.3
VIT_18s0001g12240.t01	Wine grape	mitochondrion	90.39	84.4
GSMUA_Achr6P09990_001	Banana	cytosol	16.02	83.33
CDY19410	Canola	cytosol	29.98	81.88
TraesCS1B01G248600.1	Wheat	cytosol	79.41	78.86
GSMUA_Achr10P...	Banana	cytosol	15.33	75.28
GSMUA_Achr11P...	Banana	cytosol, mitochondrion	85.35	67.94

Protein Annotations

MapMan:17.3.2.1.1	Gene3D:3.30.1330.30	Gene3D:3.30.420.60	Gene3D:3.30.960.10	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003747	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006412	GO:GO:0006415	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0019538	InterPro:IPR024049	InterPro:IPR029064
InterPro:L30e-like	PFAM:PF03463	PFAM:PF03464	PFAM:PF03465	PANTHER:PTHR10113	PANTHER:PTHR10113:SF13
InterPro:Peptide_chain-rel_eRF1/aRF1	InterPro:Release_factor_eRF1/aRF1_N	SMART:SM01194	SUPFAM:SSF53137	SUPFAM:SSF55315	SUPFAM:SSF55481
TIGRFAMs:TIGR03676	EnsemblPlantsGene:TraesCS2B01G213800	EnsemblPlants:TraesCS2B01G213800.1	InterPro:eRF1_1_Pelota	InterPro:eRF1_2	InterPro:eRF1_3

Description

No Description!

Coordinates

chr2B:-:198540969..198545139

Molecular Weight (calculated)

49133.3 Da

IEP (calculated)

5.174

GRAVY (calculated)

-0.426

Length

437 amino acids

Sequence
(BLAST)

001: MSESQETDRN IEIWKIKKLI KALESARGNG TSMISLIMPP RDQVSRVAKM LGDEYGTASN IKSRVNRQSV LGAITSAQQR LKLYNRVPPN GLVLYTGTIV
101: TDDGKEKKVT IDFEPFKPIN VSLYLCDNKF HTEALNELLE SDDKFGFIVM DGNGTLFGTL SGNTREVLHK FTVDLPKKHG RGGQSALRFA RLRMEKRHNY
201: VRKTAELATQ FFINPATSQP NVSGLILAGS ADFKTELSQS DMFDQRLQAK ILNVVDVSYG GENGFNQAIE LSAEILANVK FIQEKKLIGK YFEEISQDTG
301: KYVFGVDDTL KALEMGAVET LIVWENLDIN RYSLKHSVSG EVIVKHLNKE QEADQSNFRD SETNAELEVQ EKISLLEWFA NEYKKFGCAL EFVTNKSQEG
401: SQFCRGFGGI GGLLRYQLDM RSFDEVSDDE GLYEDSD

Best Arabidopsis Sequence Match ( AT3G26618.1 )
(BLAST)

001: MADQESDKNI EIWKIKKLIK GLETARGNGT SMISLIMPPR DQVARVTKML ADEYGTASNI KSRVNRQSVL SAITSAQQRL KLYNKVPPNG LVLYTGTIVT
101: DDGKEKKVTI DFEPFKPINA SLYLCDNKFH TEPLNELLES DDKFGFIVMD GNGTLFGTLS GNTREVLHKF TVDLPKKHGR GGQSALRFAR LRMEKRHNYV
201: RKTAELATQF YINPATSQPN VSGLILAGSA DFKTELSQSE LFDPRLQAKI LNVVDVSYGG ENGFNQAIEL SAEILSNVKF IQEKKLIGKY FEEISQDTGK
301: YVFGVEDTLK ALEMGAVETL IVWENLDINR YELKNNTTGE IVIKHLGKDQ ENNQSNFHDA ETNAELEVQE KMPLLEWFAN EYKRFGCTLE FVTNKSQEGS
401: QFCRGFGGIG GLLRYQLDMR TFDELSDGEV YEDSD

Arabidopsis Description

ERF1-3ERF1-3 [Source:UniProtKB/TrEMBL;Acc:A0A178VIS2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.