Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr10P... |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G12920.1 | GSMUA_Achr10P... | AT3G58750.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr10P... | Banana | cytosol | 92.86 | 87.64 |
| GSMUA_Achr10P... | Banana | cytosol | 88.1 | 74.0 |
| GSMUA_Achr8P09860_001 | Banana | cytosol | 82.14 | 22.33 |
| KRH06769 | Soybean | mitochondrion | 82.14 | 18.7 |
| AT3G26618.1 | Thale cress | cytosol | 84.52 | 16.32 |
| KRH08442 | Soybean | cytosol, nucleus | 84.52 | 16.28 |
| Os03t0702800-01 | Rice | cytosol, plasma membrane | 84.52 | 16.25 |
| KRH70101 | Soybean | cytosol | 84.52 | 16.25 |
| EER93602 | Sorghum | cytosol | 84.52 | 16.25 |
| AT1G12920.1 | Thale cress | cytosol | 83.33 | 16.13 |
| TraesCS4A01G273100.1 | Wheat | cytosol | 83.33 | 16.02 |
| TraesCS2B01G213800.1 | Wheat | cytosol | 83.33 | 16.02 |
| TraesCS2A01G192900.1 | Wheat | cytosol | 83.33 | 16.02 |
| EER99630 | Sorghum | cytosol | 83.33 | 16.02 |
| TraesCS4B01G040900.1 | Wheat | cytosol | 83.33 | 16.02 |
| TraesCS4D01G038300.1 | Wheat | cytosol | 83.33 | 16.02 |
| Os07t0587400-01 | Rice | cytosol | 80.95 | 15.56 |
| PGSC0003DMT400019675 | Potato | cytosol | 80.95 | 15.56 |
| PGSC0003DMT400060405 | Potato | cytosol | 80.95 | 15.56 |
| Solyc05g055210.1.1 | Tomato | plastid | 79.76 | 15.33 |
| Solyc11g006660.1.1 | Tomato | nucleus | 79.76 | 15.33 |
| KRG94758 | Soybean | cytosol, endoplasmic reticulum | 54.76 | 13.26 |
| GSMUA_Achr11P... | Banana | cytosol, mitochondrion | 82.14 | 12.57 |
| HORVU3Hr1G060530.4 | Barley | cytosol | 33.33 | 11.52 |
| Zm00001d021144_P001 | Maize | cytosol | 5.95 | 2.81 |
| GSMUA_Achr6P10000_001 | Banana | cytosol | 2.38 | 0.7 |
| GSMUA_Achr10P... | Banana | cytosol | 2.38 | 0.7 |
| GSMUA_Achr10P... | Banana | cytosol | 1.19 | 0.36 |
Protein Annotations
| Gene3D:3.30.1330.30 | MapMan:35.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003747 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006412 |
| GO:GO:0006415 | GO:GO:0008135 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0016043 | GO:GO:0019538 | EnsemblPlantsGene:GSMUA_Achr6G09990_001 | EnsemblPlants:GSMUA_Achr6P09990_001 | EnsemblPlants:GSMUA_Achr6T09990_001 | InterPro:IPR029064 |
| InterPro:L30e-like | UniProt:M0T5P8 | PFAM:PF03465 | PANTHER:PTHR10113 | PANTHER:PTHR10113:SF14 | InterPro:Peptide_chain-rel_eRF1/aRF1 |
| SUPFAM:SSF55315 | UniParc:UPI000295EC66 | InterPro:eRF1_3 | SEG:seg | : | : |
Description
Eukaryotic peptide chain release factor subunit 1-3 [Source:GMGC_GENE;Acc:GSMUA_Achr6G09990_001]
Coordinates
chr6:-:6690769..6691451
Molecular Weight (calculated)
9794.3 Da
IEP (calculated)
3.996
GRAVY (calculated)
-0.544
Length
84 amino acids
Sequence
(BLAST)
(BLAST)
1: MGAVETLIVW ENLDINRYEK TSLLEWFANE YKRFGCTLEF VTNKSQEGSQ FCRGFGGIGG ILRYQLDMRS LDEYSDDEVY EDSD
001: MADQESDKNI EIWKIKKLIK GLETARGNGT SMISLIMPPR DQVARVTKML ADEYGTASNI KSRVNRQSVL SAITSAQQRL KLYNKVPPNG LVLYTGTIVT
101: DDGKEKKVTI DFEPFKPINA SLYLCDNKFH TEPLNELLES DDKFGFIVMD GNGTLFGTLS GNTREVLHKF TVDLPKKHGR GGQSALRFAR LRMEKRHNYV
201: RKTAELATQF YINPATSQPN VSGLILAGSA DFKTELSQSE LFDPRLQAKI LNVVDVSYGG ENGFNQAIEL SAEILSNVKF IQEKKLIGKY FEEISQDTGK
301: YVFGVEDTLK ALEMGAVETL IVWENLDINR YELKNNTTGE IVIKHLGKDQ ENNQSNFHDA ETNAELEVQE KMPLLEWFAN EYKRFGCTLE FVTNKSQEGS
401: QFCRGFGGIG GLLRYQLDMR TFDELSDGEV YEDSD
101: DDGKEKKVTI DFEPFKPINA SLYLCDNKFH TEPLNELLES DDKFGFIVMD GNGTLFGTLS GNTREVLHKF TVDLPKKHGR GGQSALRFAR LRMEKRHNYV
201: RKTAELATQF YINPATSQPN VSGLILAGSA DFKTELSQSE LFDPRLQAKI LNVVDVSYGG ENGFNQAIEL SAEILSNVKF IQEKKLIGKY FEEISQDTGK
301: YVFGVEDTLK ALEMGAVETL IVWENLDINR YELKNNTTGE IVIKHLGKDQ ENNQSNFHDA ETNAELEVQE KMPLLEWFAN EYKRFGCTLE FVTNKSQEGS
401: QFCRGFGGIG GLLRYQLDMR TFDELSDGEV YEDSD
Arabidopsis Description
ERF1-3ERF1-3 [Source:UniProtKB/TrEMBL;Acc:A0A178VIS2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.