Factsheet for GSMUA_Achr6P10000_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 6
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	cytosol	94.72	96.42
GSMUA_Achr10P...	Banana	cytosol	94.01	94.01
GSMUA_Achr8P09860_001	Banana	cytosol	75.7	69.58
Os01t0939500-00	Rice	cytosol	91.55	59.63
HORVU3Hr1G104360.1	Barley	cytosol	91.2	59.4
TraesCSU01G051800.1	Wheat	cytosol	91.2	57.43
TraesCS3D01G472200.1	Wheat	cytosol	91.2	57.43
TraesCS3A01G477500.1	Wheat	cytosol	91.2	57.43
HORVU1Hr1G057880.1	Barley	cytosol	85.56	55.1
TraesCS1B01G248600.1	Wheat	cytosol	85.21	55.0
Os05t0373900-01	Rice	cytosol, plasma membrane	84.86	54.77
TraesCS1D01G237100.1	Wheat	cytosol	84.15	54.2
TraesCS1A01G235000.1	Wheat	cytosol	82.39	52.82
Zm00001d037868_P001	Maize	cytosol	81.34	52.74
OQU77890	Sorghum	cytosol	83.1	51.75
GSMUA_Achr11P...	Banana	cytosol, mitochondrion	95.07	49.18
HORVU3Hr1G104200.2	Barley	cytosol	75.35	48.75
TraesCS3D01G472100.1	Wheat	cytosol	75.0	48.41
TraesCSU01G150500.1	Wheat	cytosol	75.0	48.19
TraesCS3A01G477400.1	Wheat	cytosol	73.24	47.06
Bra020726.1-P	Field mustard	cytosol	34.86	38.08
CDY45916	Canola	cytosol	34.86	38.08
GSMUA_Achr6P09990_001	Banana	cytosol	0.7	2.38
GSMUA_Achr10P...	Banana	cytosol	0.7	2.25
GSMUA_Achr10P...	Banana	cytosol	0.7	2.0

Protein Annotations

MapMan:17.3.2.1.1	Gene3D:3.30.420.60	Gene3D:3.30.960.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003747	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006412	GO:GO:0006415	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016043	GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr6G10000_001	EnsemblPlants:GSMUA_Achr6P10000_001	EnsemblPlants:GSMUA_Achr6T10000_001
InterPro:IPR024049	UniProt:M0T5P9	PFAM:PF03463	PFAM:PF03464	PANTHER:PTHR10113	PANTHER:PTHR10113:SF19
InterPro:Peptide_chain-rel_eRF1/aRF1	InterPro:Release_factor_eRF1/aRF1_N	SMART:SM01194	SUPFAM:SSF53137	SUPFAM:SSF55481	TIGRFAMs:TIGR03676
UniParc:UPI000294B5BA	InterPro:eRF1_1_Pelota	InterPro:eRF1_2	:	:	:

Description

Eukaryotic peptide chain release factor subunit 1-1 [Source:GMGC_GENE;Acc:GSMUA_Achr6G10000_001]

Coordinates

chr6:-:6691463..6695313

Molecular Weight (calculated)

31565.1 Da

IEP (calculated)

9.488

GRAVY (calculated)

-0.275

Length

284 amino acids

Sequence
(BLAST)

001: MADGHETDKN IEIWKIKKLI KALESARGNG TSMISLIMPP RDQVSRVTKM LGDEYGTASN IKSRVNRQSV LAAITSAQQR LKLYNKVPPN GLVLYTGTIV
101: TEDGKEKKVT IDFEPFKPIN ASLYLCDNKF HTEALNELLE SDDKFGFIVM DGNGTLFGTL SGNTREVLHK FTVDLPKKHG RGGQSALRFA RLRMEKRHNY
201: VRKTAELATQ FFINPATSQP NVAGLILAGS ADFKTELSQS DMFDQRLQAK ILNVVDVSYG GENGFNQAIE LSAEIFMSLV LMTL

Best Arabidopsis Sequence Match ( AT5G47880.1 )
(BLAST)

001: MGDKNDDDKN IEIWKIKKLI KSLEAARGNG TSMISLIMPP RDQVSRVTKM LGDEYGTASN IKSRVNRQSV LGAITSAQQR LKLYNRVPPN GLVLYTGTIV
101: NEDGKEKKVT IDFEPFRPIN ASLYLCDNKF HTEALNELLE SDDKFGFIVM DGNGTLFGTL SGNTREVLHK FSVDLPKKHG RGGQSALRFA RLRMEKRHNY
201: VRKTAELATQ YYINPATSQP NVSGLILAGS ADFKTELSQS DMFDPRLAAK ILNVVDVSYG GENGFNQAIE LSAEILANVK FIQEKRLIGK YFEEISQDTG
301: KYVFGVEDTL NALESGAIET LIVWENLDIN RYVMKNSATG ETVIKHLNKE QEANTENFKV ADSDLALDVE EKLSLLEWLA NEYRRFGCAL EFVTNKSQEG
401: SQFCRGFGGI GGILRYQLDM TAFDSEDGEA LDDDSE

Arabidopsis Description

ERF1-1ERF1-1 [Source:UniProtKB/TrEMBL;Acc:A0A178UFY7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.