Factsheet for TraesCS1A01G235000.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G248600.1	Wheat	cytosol	95.94	96.59
TraesCS1D01G237100.1	Wheat	cytosol	95.94	96.37
HORVU1Hr1G057880.1	Barley	cytosol	93.0	93.42
Os05t0373900-01	Rice	cytosol, plasma membrane	86.68	87.27
Zm00001d037868_P001	Maize	cytosol	83.07	84.02
GSMUA_Achr10P...	Banana	cytosol	52.14	82.8
GSMUA_Achr6P10000_001	Banana	cytosol	52.82	82.39
OQU77890	Sorghum	cytosol	83.3	80.92
TraesCS3A01G477500.1	Wheat	cytosol	79.91	78.49
TraesCS4A01G273100.1	Wheat	cytosol	76.52	77.57
TraesCS2A01G192900.1	Wheat	cytosol	75.85	76.89
TraesCS3A01G477400.1	Wheat	cytosol	67.27	67.42
GSMUA_Achr10P...	Banana	cytosol	11.29	50.0
Bra020726.1-P	Field mustard	cytosol	23.25	39.62
CDY45916	Canola	cytosol	23.25	39.62

Protein Annotations

MapMan:17.3.2.1.1	Gene3D:3.30.1330.30	Gene3D:3.30.420.60	Gene3D:3.30.960.10	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003747	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006412	GO:GO:0006415	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0019538	InterPro:IPR024049	InterPro:IPR029064
InterPro:L30e-like	PFAM:PF03463	PFAM:PF03464	PFAM:PF03465	PANTHER:PTHR10113	PANTHER:PTHR10113:SF11
InterPro:Peptide_chain-rel_eRF1/aRF1	InterPro:Release_factor_eRF1/aRF1_N	SMART:SM01194	SUPFAM:SSF53137	SUPFAM:SSF55315	SUPFAM:SSF55481
TIGRFAMs:TIGR03676	EnsemblPlantsGene:TraesCS1A01G235000	EnsemblPlants:TraesCS1A01G235000.1	InterPro:eRF1_1_Pelota	InterPro:eRF1_2	InterPro:eRF1_3
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr1A:+:415297478..415298809

Molecular Weight (calculated)

49414.6 Da

IEP (calculated)

4.923

GRAVY (calculated)

-0.382

Length

443 amino acids

Sequence
(BLAST)

001: MVVEGYEADK NIQIWKVKKL IKGLDAARGN GTSMISLIIP PRDQVSRVAK MLGDEYGTAS NIKSRVNRQS VLAAITSAQQ RPKLYSRVPP NGLVLYTGTV
101: VTDDGKEKKV TFDFEPFRPI NASLYLCDNK FHTEPLNELL ESDDRFGFIA MDGNGTLYGT LSGNSREVVY KFSVDLPKKH GRGGQSALRF ARLRMEKRHN
201: YLRKAAELAT HFFTNPATNQ PNVVGLILAG SADFKTELGK SEMFDQRLQA KIIKSVDVSY GGESGFNQAI EMSVEVLSEV KFVQEKKLLR KYFEEISQDT
301: GKYVLGVQDT MAALEMGAVH TLIVWENLDV RRYELKNSAT GETVVKYING GQEADQSNLG VDEAACGELD VVDRVLLLEW FAENYQQYGC KLEFVTNRSQ
401: EGSQFCRGFG GIGGILRYPA DVAAYNDDDD DDMLDDDVYE GLE

Best Arabidopsis Sequence Match ( AT1G12920.1 )
(BLAST)

001: MAEEADTNIE IWKIKKLIKG LESARGNGTS MISLIMPPRD QVSRVTKMLG DEYGTASNIK SRVNRQSVLS AITSAQQRLK LYNKVPTNGL VLYTGTIVND
101: DGKEKKVTFD FEPFRPINAS LYLCDNKFHT EALNELLESD DKFGFIVMDG NGTLFGTLSG NTREVLHKFT VDLPKKHGRG GQSALRFARL RMEKRHNYVR
201: KTAELATQFY INPATSQPNV SGLILAGSAD FKTELSQSEL FDPRLQAKIL NVVDVSYGGE NGFNQAIELS AEILSNVKFI QEKKLIGKYF EEISQDTGKY
301: VFGVEDTLKA LEMGAIETLI VWENLDINRY ELKNSTTGEM VVKHFGKDQE SDTSNFHDSE TNAELEVQEK MPLLEWFANE YKRFGCTLEF VTNKSQEGSQ
401: FCRGFGGIGG MLRYQLDMRT FDELSDTEVY EDSD

Arabidopsis Description

ERF1-2Eukaryotic peptide chain release factor subunit 1-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPV8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.