Factsheet for Os05t0373900-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, cytosol

Predictor Summary:

cytosol 5
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G248600.1	Wheat	cytosol	89.32	89.32
HORVU1Hr1G057880.1	Barley	cytosol	89.32	89.12
TraesCS1D01G237100.1	Wheat	cytosol	89.32	89.12
Zm00001d037868_P001	Maize	cytosol	88.41	88.81
TraesCS1A01G235000.1	Wheat	cytosol	87.27	86.68
OQU77890	Sorghum	cytosol	88.64	85.53
GSMUA_Achr6P10000_001	Banana	cytosol	54.77	84.86
GSMUA_Achr10P...	Banana	cytosol	53.41	84.23
Os01t0939500-00	Rice	cytosol	81.82	82.57
Os03t0702800-01	Rice	cytosol, plasma membrane	80.23	80.78
Os07t0587400-01	Rice	cytosol	78.18	78.72
GSMUA_Achr10P...	Banana	cytosol	12.05	53.0
Bra020726.1-P	Field mustard	cytosol	23.86	40.38
CDY45916	Canola	cytosol	23.86	40.38

Protein Annotations

MapMan:17.3.2.1.1	Gene3D:3.30.1330.30	Gene3D:3.30.420.60	Gene3D:3.30.960.10	EntrezGene:4338603	ProteinID:AAT01338.1
ProteinID:AAT58841.1	EMBL:AK064587	ProteinID:BAF17284.1	ProteinID:BAS93713.1	ProteinID:EEE63502.1	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003747	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006412	GO:GO:0006415	GO:GO:0008135	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0019538	InterPro:IPR024049
InterPro:IPR029064	InterPro:L30e-like	EnsemblPlantsGene:Os05g0373900	EnsemblPlants:Os05t0373900-01	PFAM:PF03463	PFAM:PF03464
PFAM:PF03465	PANTHER:PTHR10113	PANTHER:PTHR10113:SF11	InterPro:Peptide_chain-rel_eRF1/aRF1	UniProt:Q75K79	InterPro:Release_factor_eRF1/aRF1_N
SMART:SM01194	SUPFAM:SSF53137	SUPFAM:SSF55315	SUPFAM:SSF55481	TIGRFAMs:TIGR03676	UniParc:UPI000035ACA0
RefSeq:XP_015639138.1	InterPro:eRF1_1_Pelota	InterPro:eRF1_2	InterPro:eRF1_3	SEG:seg	:

Description

Similar to Eukaryotic peptide chain release factor subunit 1 (eRF1) (Eukaryotic release factor 1) (TB3-1) (Cl1 protein). (Os05t0373900-01)

Coordinates

chr5:+:18016742..18020353

Molecular Weight (calculated)

49184.1 Da

IEP (calculated)

4.635

GRAVY (calculated)

-0.385

Length

440 amino acids

Sequence
(BLAST)

001: MGEGHETDKN IEVWKVKKLI KALDAARGNG TSMISLIMPP RDQVSRVTKM LGDEYGTASN IKSRVNRQSV LAAITSAQQR LKLYSRVPVN GLVLYTGTIV
101: TDDGKEKKVT FDFEPFRPIN ASLYLCDNKF HTEALNELLE SDDKFGFIIM DGNGTLYGTL SGNSREVLYK FSVDLPKKHG RGGQSAVRFA RLRMERRHNY
201: LRKAAELATQ FFINSATNQP NIAGLILAGS ADFKTELGKS EMFDPRLQAK VIKTLDVSYG GESGFNQAIE MSAEVLSDVK FVQEKKLIGK YFEEISQDTG
301: KYVLGVQDTI TALEIGAVDT LIVWENLDVR RYELKNTATG ETVIKYLNSD QEADQSNFVD EATSGEFDVI DKPLLLEWFA ENYQQYGCTL EFVTNKSQEG
401: SQFCRGFGGI GGILRYPADV AAFNDDDDDM LDEADYEDFE

Best Arabidopsis Sequence Match ( AT1G12920.1 )
(BLAST)

001: MAEEADTNIE IWKIKKLIKG LESARGNGTS MISLIMPPRD QVSRVTKMLG DEYGTASNIK SRVNRQSVLS AITSAQQRLK LYNKVPTNGL VLYTGTIVND
101: DGKEKKVTFD FEPFRPINAS LYLCDNKFHT EALNELLESD DKFGFIVMDG NGTLFGTLSG NTREVLHKFT VDLPKKHGRG GQSALRFARL RMEKRHNYVR
201: KTAELATQFY INPATSQPNV SGLILAGSAD FKTELSQSEL FDPRLQAKIL NVVDVSYGGE NGFNQAIELS AEILSNVKFI QEKKLIGKYF EEISQDTGKY
301: VFGVEDTLKA LEMGAIETLI VWENLDINRY ELKNSTTGEM VVKHFGKDQE SDTSNFHDSE TNAELEVQEK MPLLEWFANE YKRFGCTLEF VTNKSQEGSQ
401: FCRGFGGIGG MLRYQLDMRT FDELSDTEVY EDSD

Arabidopsis Description

ERF1-2Eukaryotic peptide chain release factor subunit 1-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPV8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.