Factsheet for Os07t0587400-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 6
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

cytosol: 19685898
plasma membrane: 27800704
plastid: 27992503

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 19685898 doi

KA Doroshenk, AJ Crofts, RT Morris, JJ Wyrick, TW Okita

Institute of Biological Chemistry, Washington State University, Pullman, Washington 99164-6340, USA.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0232400-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G12920.1	Os02t0232400-01	AT3G58750.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d006725_P001	Maize	cytosol, extracellular	95.88	95.88
EER99630	Sorghum	cytosol	95.88	95.88
Os03t0702800-01	Rice	cytosol, plasma membrane	94.74	94.74
TraesCS2A01G192900.1	Wheat	cytosol	94.28	94.28
TraesCS2B01G213800.1	Wheat	cytosol	94.28	94.28
GSMUA_Achr10P...	Banana	cytosol	60.87	93.66
KRH70101	Soybean	cytosol	93.59	93.59
Solyc12g010520.1.1	Tomato	nucleus	86.27	93.09
GSMUA_Achr8P09860_001	Banana	cytosol	65.45	92.56
KRH08442	Soybean	cytosol, nucleus	92.22	92.43
PGSC0003DMT400020395	Potato	cytosol	92.22	92.22
VIT_18s0041g00730.t01	Wine grape	cytosol	91.76	91.76
Solyc07g006130.1.1	Tomato	cytosol, nucleus	84.9	91.6
KRH06769	Soybean	mitochondrion	77.35	91.6
PGSC0003DMT400029003	Potato	cytosol	90.62	90.62
PGSC0003DMT400028999	Potato	cytosol	90.62	90.62
KRH09439	Soybean	cytosol	90.62	90.62
CDY00188	Canola	cytosol	90.16	90.57
CDY56364	Canola	cytosol	89.7	90.11
Bra034244.1-P	Field mustard	cytosol	89.7	90.11
VIT_18s0072g01010.t01	Wine grape	cytosol	89.93	89.93
AT3G26618.1	Thale cress	cytosol	89.47	89.89
Bra016748.1-P	Field mustard	cytosol	89.02	89.43
CDY21074	Canola	cytosol	89.02	89.43
AT1G12920.1	Thale cress	cytosol	88.79	89.4
KRH38906	Soybean	endoplasmic reticulum	91.53	88.69
PGSC0003DMT400060405	Potato	cytosol	87.41	87.41
Solyc05g055210.1.1	Tomato	plastid	87.41	87.41
PGSC0003DMT400019675	Potato	cytosol	87.41	87.41
Solyc11g006660.1.1	Tomato	nucleus	86.96	86.96
HORVU2Hr1G035400.1	Barley	cytosol	94.05	86.71
Os01t0939500-00	Rice	cytosol	86.27	86.47
KRG94758	Soybean	cytosol, endoplasmic reticulum	68.65	86.46
VIT_18s0001g12240.t01	Wine grape	mitochondrion	91.76	85.68
CDY34600	Canola	cytosol	32.72	85.63
CDY19410	Canola	cytosol	29.98	81.88
GSMUA_Achr6P09990_001	Banana	cytosol	15.56	80.95
Os05t0373900-01	Rice	cytosol, plasma membrane	78.72	78.18
GSMUA_Achr10P...	Banana	cytosol	14.87	73.03
GSMUA_Achr11P...	Banana	cytosol, mitochondrion	84.67	67.4

Protein Annotations

MapMan:17.3.2.1.1	Gene3D:3.30.1330.30	Gene3D:3.30.420.60	Gene3D:3.30.960.10	EntrezGene:4343757	EMBL:AK103740
ProteinID:BAC83252.1	ProteinID:BAD30922.1	ProteinID:BAF22051.1	ProteinID:BAT02407.1	ProteinID:BAT02408.1	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003747	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006412	GO:GO:0006415	GO:GO:0008135	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0019538	InterPro:IPR024049
InterPro:IPR029064	InterPro:L30e-like	EnsemblPlantsGene:Os07g0587400	EnsemblPlants:Os07t0587400-01	PFAM:PF03463	PFAM:PF03464
PFAM:PF03465	PANTHER:PTHR10113	PANTHER:PTHR10113:SF13	InterPro:Peptide_chain-rel_eRF1/aRF1	UniProt:Q6ZIQ1	InterPro:Release_factor_eRF1/aRF1_N
SMART:SM01194	SUPFAM:SSF53137	SUPFAM:SSF55315	SUPFAM:SSF55481	TIGRFAMs:TIGR03676	UniParc:UPI00001BF26D
RefSeq:XP_015647295.1	RefSeq:XP_015647296.1	InterPro:eRF1_1_Pelota	InterPro:eRF1_2	InterPro:eRF1_3	:

Description

Similar to Eukaryotic peptide chain release factor subunit 1-3 (eRF1-3) (Eukaryotic release factor 1-3) (Omnipotent suppressor protein 1 homolog 3) (SUP1 homolog 3). (Os07t0587400-01);Similar to eukaryotic peptide chain release factor subunit 1-1. (Os07t0587400-02)

Coordinates

chr7:-:23904950..23908994

Molecular Weight (calculated)

49093.2 Da

IEP (calculated)

5.281

GRAVY (calculated)

-0.428

Length

437 amino acids

Sequence
(BLAST)

001: MSDSHETDRN IEIWKIKKLI KALESARGNG TSMISLIMPP RDQIARVAKM LGDEYGTASN IKSRVNRQSV LAAITSAQQR LKLYNKVPPN GLVLYTGTIV
101: TEDGKEKKVT IDFEPFKPIN VSLYLCDNKF HTEALNELLE SDDKFGFIVM DGNGTLFGTL SGNTREVLHK FTVDLPKKHG RGGQSALRFA RLRMEKRHNY
201: VRKTAELATQ FFINPATSQP NVSGLILAGS ADFKTELSQS DMFDQRLQAK ILNVVDVSYG GENGFNQAIE LSAEILANVK FIQEKKLIGK YFEEISQDTG
301: KYVFGVDDTL KALEMGAVET LIVWENLETN RYVLKNSASG ETVIKHFNKE QEADQSNFRD PASNAELEVQ EKMSLLEWFA NEYKKFGCSL EFVTNKSQEG
401: SQFCRGFGGI GGILRYQLDI RSFDELSDDE GLYEDSD

Best Arabidopsis Sequence Match ( AT3G26618.1 )
(BLAST)

001: MADQESDKNI EIWKIKKLIK GLETARGNGT SMISLIMPPR DQVARVTKML ADEYGTASNI KSRVNRQSVL SAITSAQQRL KLYNKVPPNG LVLYTGTIVT
101: DDGKEKKVTI DFEPFKPINA SLYLCDNKFH TEPLNELLES DDKFGFIVMD GNGTLFGTLS GNTREVLHKF TVDLPKKHGR GGQSALRFAR LRMEKRHNYV
201: RKTAELATQF YINPATSQPN VSGLILAGSA DFKTELSQSE LFDPRLQAKI LNVVDVSYGG ENGFNQAIEL SAEILSNVKF IQEKKLIGKY FEEISQDTGK
301: YVFGVEDTLK ALEMGAVETL IVWENLDINR YELKNNTTGE IVIKHLGKDQ ENNQSNFHDA ETNAELEVQE KMPLLEWFAN EYKRFGCTLE FVTNKSQEGS
401: QFCRGFGGIG GLLRYQLDMR TFDELSDGEV YEDSD

Arabidopsis Description

ERF1-3ERF1-3 [Source:UniProtKB/TrEMBL;Acc:A0A178VIS2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.