Factsheet for Solyc11g006660.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 5
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 25464976
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc07g055840.2.1
Solyc12g011000.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G12920.1	Solyc07g055840.2.1	AT3G58750.1	21798944
AT1G12920.1	Solyc12g011000.1.1	AT3G58750.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400019675	Potato	cytosol	99.54	99.54
Solyc05g055210.1.1	Tomato	plastid	96.57	96.57
KRH70101	Soybean	cytosol	89.93	89.93
GSMUA_Achr10P...	Banana	cytosol	58.35	89.79
KRH08442	Soybean	cytosol, nucleus	89.24	89.45
KRH06769	Soybean	mitochondrion	75.29	89.16
GSMUA_Achr8P09860_001	Banana	cytosol	62.47	88.35
Os03t0702800-01	Rice	cytosol, plasma membrane	88.33	88.33
AT3G26618.1	Thale cress	cytosol	87.64	88.05
EER93602	Sorghum	cytosol	87.41	87.41
Os07t0587400-01	Rice	cytosol	86.96	86.96
TraesCS2A01G192900.1	Wheat	cytosol	86.96	86.96
TraesCS2B01G213800.1	Wheat	cytosol	86.73	86.73
Solyc12g010520.1.1	Tomato	nucleus	80.32	86.67
AT1G12920.1	Thale cress	cytosol	86.04	86.64
EER99630	Sorghum	cytosol	86.5	86.5
Solyc07g006130.1.1	Tomato	cytosol, nucleus	79.63	85.93
TraesCS4D01G038300.1	Wheat	cytosol	84.9	84.9
TraesCS4B01G040900.1	Wheat	cytosol	84.9	84.9
TraesCS4A01G273100.1	Wheat	cytosol	84.9	84.9
KRG94758	Soybean	cytosol, endoplasmic reticulum	66.36	83.57
GSMUA_Achr6P09990_001	Banana	cytosol	15.33	79.76
GSMUA_Achr10P...	Banana	cytosol	14.42	70.79
GSMUA_Achr11P...	Banana	cytosol, mitochondrion	81.01	64.48
CDX98026	Canola	cytosol	18.54	57.86
HORVU3Hr1G060530.4	Barley	cytosol	28.6	51.44
Zm00001d021144_P001	Maize	cytosol	20.59	50.56
Bra019799.1-P	Field mustard	cytosol	7.78	33.01

Protein Annotations

MapMan:17.3.2.1.1	Gene3D:3.30.1330.30	Gene3D:3.30.420.60	Gene3D:3.30.960.10	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003747	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006412	GO:GO:0006415	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0019538	InterPro:IPR024049	InterPro:IPR029064
UniProt:K4D4S7	InterPro:L30e-like	PFAM:PF03463	PFAM:PF03464	PFAM:PF03465	PANTHER:PTHR10113
PANTHER:PTHR10113:SF19	InterPro:Peptide_chain-rel_eRF1/aRF1	InterPro:Release_factor_eRF1/aRF1_N	SMART:SM01194	SUPFAM:SSF53137	SUPFAM:SSF55315
SUPFAM:SSF55481	EnsemblPlantsGene:Solyc11g006660.1	EnsemblPlants:Solyc11g006660.1.1	TIGRFAMs:TIGR03676	UniParc:UPI0002769F46	InterPro:eRF1_1_Pelota
InterPro:eRF1_2	InterPro:eRF1_3	:	:	:	:

Description

No Description!

Coordinates

chr11:+:1269001..1270314

Molecular Weight (calculated)

48983.2 Da

IEP (calculated)

5.068

GRAVY (calculated)

-0.414

Length

437 amino acids

Sequence
(BLAST)

001: MADGQENDKN IEIWKMKKLI KALESARGNG TSMISLIIPP GDQISRITKM LAEEYGTASN IKSRVNRQSV LGAITSAQQR LKLYNKVPPN GLVLYTGTIM
101: TEDGKEKKVT FDLTPFKPIN ASLYLCDNKF HTGPLGELLE SDEKFGFIVM DGNGTLFGTL SGNTREILHK FTVDLPKKHG RGGQSALRFA RLRMEKRHNY
201: VRKTAELATQ FFINPATSQP NVSGLILAGS ADFKTELSQS DMFDPRLQAK ILNVVDVSYG GENGFSQAIE LSAEILSNVK FIQEKRLIGK FFEEISQDTG
301: KYVFGVDDTI KALEMGAVET LVVWENLDIN RYVLKNSVTN EIVIKHLNKD QEADQSNFKD SENSAELEVQ DKMPLLEWFA NEYKTFGCSL EFVTNRSQEG
401: SQFCRGFGGI GGILRYQLDM RSFDEPSDEG EYFEDSD

Best Arabidopsis Sequence Match ( AT3G26618.1 )
(BLAST)

001: MADQESDKNI EIWKIKKLIK GLETARGNGT SMISLIMPPR DQVARVTKML ADEYGTASNI KSRVNRQSVL SAITSAQQRL KLYNKVPPNG LVLYTGTIVT
101: DDGKEKKVTI DFEPFKPINA SLYLCDNKFH TEPLNELLES DDKFGFIVMD GNGTLFGTLS GNTREVLHKF TVDLPKKHGR GGQSALRFAR LRMEKRHNYV
201: RKTAELATQF YINPATSQPN VSGLILAGSA DFKTELSQSE LFDPRLQAKI LNVVDVSYGG ENGFNQAIEL SAEILSNVKF IQEKKLIGKY FEEISQDTGK
301: YVFGVEDTLK ALEMGAVETL IVWENLDINR YELKNNTTGE IVIKHLGKDQ ENNQSNFHDA ETNAELEVQE KMPLLEWFAN EYKRFGCTLE FVTNKSQEGS
401: QFCRGFGGIG GLLRYQLDMR TFDELSDGEV YEDSD

Arabidopsis Description

ERF1-3ERF1-3 [Source:UniProtKB/TrEMBL;Acc:A0A178VIS2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.