Factsheet for GSMUA_Achr10P25550_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, secretory
BaCelLo:	secretory
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	extracellular
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G12920.1	GSMUA_Achr10P...	AT3G58750.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P09990_001	Banana	cytosol	87.64	92.86
GSMUA_Achr10P...	Banana	cytosol	78.65	70.0
GSMUA_Achr8P09860_001	Banana	cytosol	75.28	21.68
KRH06769	Soybean	mitochondrion	75.28	18.16
AT3G26618.1	Thale cress	cytosol	78.65	16.09
AT1G12920.1	Thale cress	cytosol	77.53	15.9
KRH08442	Soybean	cytosol, nucleus	76.4	15.6
EER99630	Sorghum	cytosol	76.4	15.56
KRH70101	Soybean	cytosol	76.4	15.56
EER93602	Sorghum	cytosol	76.4	15.56
TraesCS2B01G213800.1	Wheat	cytosol	75.28	15.33
TraesCS2A01G192900.1	Wheat	cytosol	75.28	15.33
Os03t0702800-01	Rice	cytosol, plasma membrane	75.28	15.33
TraesCS4A01G273100.1	Wheat	cytosol	74.16	15.1
TraesCS4D01G038300.1	Wheat	cytosol	74.16	15.1
TraesCS4B01G040900.1	Wheat	cytosol	74.16	15.1
Os07t0587400-01	Rice	cytosol	73.03	14.87
PGSC0003DMT400019675	Potato	cytosol	71.91	14.65
PGSC0003DMT400060405	Potato	cytosol	71.91	14.65
Solyc05g055210.1.1	Tomato	plastid	70.79	14.42
Solyc11g006660.1.1	Tomato	nucleus	70.79	14.42
KRG94758	Soybean	cytosol, endoplasmic reticulum	49.44	12.68
GSMUA_Achr11P...	Banana	cytosol, mitochondrion	75.28	12.2
Bra019799.1-P	Field mustard	cytosol	13.48	11.65
HORVU3Hr1G060530.4	Barley	cytosol	31.46	11.52
CDX98026	Canola	cytosol	13.48	8.57
Zm00001d021144_P001	Maize	cytosol	5.62	2.81
GSMUA_Achr6P10000_001	Banana	cytosol	2.25	0.7
GSMUA_Achr10P...	Banana	cytosol	2.25	0.7
GSMUA_Achr10P...	Banana	cytosol	1.12	0.36

Protein Annotations

Gene3D:3.30.1330.30	MapMan:35.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003747
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006412
GO:GO:0006415	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016043	GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr10G25550_001	EnsemblPlants:GSMUA_Achr10P25550_001	EnsemblPlants:GSMUA_Achr10T25550_001	InterPro:IPR029064
InterPro:L30e-like	UniProt:M0RLC9	PFAM:PF03465	PANTHER:PTHR10113	PANTHER:PTHR10113:SF14	InterPro:Peptide_chain-rel_eRF1/aRF1
SUPFAM:SSF55315	UniParc:UPI00029585ED	InterPro:eRF1_3	:	:	:

Description

Eukaryotic peptide chain release factor subunit 1-3 [Source:GMGC_GENE;Acc:GSMUA_Achr10G25550_001]

Coordinates

chr10:-:29512047..29512729

Molecular Weight (calculated)

10297.2 Da

IEP (calculated)

3.996

GRAVY (calculated)

-0.282

Length

89 amino acids

Sequence
(BLAST)

1: MGAVETLIVW ENLDINRYEK VSLLEWFANE YKRFGCTLEF VTNKSQEGSQ FCRGFGGIGG VLRYQLGILQ LDMRMLDELS DDEVYEDSD

Best Arabidopsis Sequence Match ( AT3G26618.1 )
(BLAST)

001: MADQESDKNI EIWKIKKLIK GLETARGNGT SMISLIMPPR DQVARVTKML ADEYGTASNI KSRVNRQSVL SAITSAQQRL KLYNKVPPNG LVLYTGTIVT
101: DDGKEKKVTI DFEPFKPINA SLYLCDNKFH TEPLNELLES DDKFGFIVMD GNGTLFGTLS GNTREVLHKF TVDLPKKHGR GGQSALRFAR LRMEKRHNYV
201: RKTAELATQF YINPATSQPN VSGLILAGSA DFKTELSQSE LFDPRLQAKI LNVVDVSYGG ENGFNQAIEL SAEILSNVKF IQEKKLIGKY FEEISQDTGK
301: YVFGVEDTLK ALEMGAVETL IVWENLDINR YELKNNTTGE IVIKHLGKDQ ENNQSNFHDA ETNAELEVQE KMPLLEWFAN EYKRFGCTLE FVTNKSQEGS
401: QFCRGFGGIG GLLRYQLDMR TFDELSDGEV YEDSD

Arabidopsis Description

ERF1-3ERF1-3 [Source:UniProtKB/TrEMBL;Acc:A0A178VIS2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.