Factsheet for GSMUA_Achr10P14170_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 4
peroxisome 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr2P12160_001
GSMUA_Achr2P19900_001
GSMUA_Achr3P29510_001
GSMUA_Achr6P09990_001
GSMUA_Achr7P14400_001
GSMUA_Achr7P25190_001
GSMUA_Achr8P09860_001
GSMUA_Achr8P26090_001
GSMUA_Achr9P21370_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G42790.1	GSMUA_Achr10P...	AT1G12920.1	21798944
AT2G42790.1	GSMUA_Achr10P...	AT1G12920.1	21798944
AT2G42790.1	GSMUA_Achr11P...	AT1G12920.1	21798944
AT2G42790.1	GSMUA_Achr6P09990_001	AT1G12920.1	21798944
AT2G42790.1	GSMUA_Achr8P09860_001	AT1G12920.1	21798944
AT2G42790.1	GSMUA_Achr11P...	AT1G76150.1	21798944
AT2G42790.1	GSMUA_Achr2P12160_001	AT2G35500.1	21798944
AT2G42790.1	GSMUA_Achr10P...	AT3G16120.1	21798944
AT2G42790.1	GSMUA_Achr10P...	AT3G16120.1	21798944
AT2G42790.1	GSMUA_Achr2P19900_001	AT3G16120.1	21798944
AT2G42790.1	GSMUA_Achr7P14400_001	AT3G16120.1	21798944
AT2G42790.1	GSMUA_Achr7P25190_001	AT3G16120.1	21798944
AT2G42790.1	GSMUA_Achr8P26090_001	AT3G56900.1	21798944
AT2G42790.1	GSMUA_Achr10P...	AT3G58750.1	21798944
AT2G42790.1	GSMUA_AchrUn_...	AT5G55190.1	21798944
AT3G58740.1	GSMUA_Achr10P...	AT2G42790.1	21798944
AT3G58750.1	GSMUA_Achr3P29510_001	AT1G25420.1	21798944
AT3G58750.1	GSMUA_Achr9P21370_001	AT1G25420.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY15651	Canola	nucleus	31.72	84.83
CDX79848	Canola	cytosol	37.4	80.54
VIT_12s0142g00610.t01	Wine grape	plastid	83.19	77.34
TraesCS5B01G416700.1	Wheat	golgi	80.88	76.54
TraesCS5A01G413300.1	Wheat	mitochondrion	80.88	76.54
TraesCS5D01G422000.1	Wheat	unclear	80.46	76.14
Os02t0232400-01	Rice	nucleus, plastid	79.83	76.0
EES04804	Sorghum	mitochondrion	80.46	75.84
Zm00001d016248_P001	Maize	mitochondrion	79.83	75.55
Solyc07g055840.2.1	Tomato	nucleus, unclear	80.88	75.34
PGSC0003DMT400044692	Potato	plastid	80.04	74.56
PGSC0003DMT400020128	Potato	plastid	80.46	74.51
Solyc12g011000.1.1	Tomato	nucleus	80.25	74.32
HORVU5Hr1G099820.5	Barley	plastid	79.62	74.02
CDY50821	Canola	cytosol	79.2	73.92
AT2G42790.1	Thale cress	cytosol	78.99	73.87
CDX79851	Canola	cytosol	78.99	73.73
Bra004720.1-P	Field mustard	cytosol	78.99	73.73
CDX98329	Canola	cytosol, peroxisome, plastid	78.36	73.57
CDY49252	Canola	cytosol	78.36	73.57
Bra007417.1-P	Field mustard	cytosol	78.15	73.37
CDX67764	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole	78.15	73.23
Bra003355.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole	77.94	73.03
AT3G58750.1	Thale cress	endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, vacuole	78.78	72.96
CDX71925	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	78.15	72.8
KRH14452	Soybean	nucleus	77.52	72.21
KRH73702	Soybean	cytosol, plastid	76.89	71.48
KRH46090	Soybean	endoplasmic reticulum, nucleus	75.21	69.79
KRG98876	Soybean	nucleus, plastid	74.37	68.87
Bra007416.1-P	Field mustard	cytosol	63.24	67.04
CDY49249	Canola	cytosol	66.18	67.02
Bra014554.1-P	Field mustard	cytosol	65.13	65.96
CDY00587	Canola	cytosol	65.13	65.96
AT3G58740.1	Thale cress	cytosol	65.55	65.0
CDX71926	Canola	cytosol	62.82	62.42
GSMUA_Achr3P03660_001	Banana	cytosol, mitochondrion, plasma membrane, plastid	32.77	59.09
HORVU0Hr1G030280.2	Barley	cytosol	21.43	56.67
CDX89002	Canola	endoplasmic reticulum, golgi	30.88	51.94
CDY49250	Canola	extracellular	8.82	51.85
CDX71928	Canola	cytosol	65.76	37.85
VIT_06s0080g00770.t01	Wine grape	cytosol	15.76	35.38
GSMUA_Achr4P19260_001	Banana	mitochondrion	21.01	20.45

Protein Annotations

Gene3D:1.10.230.10	Gene3D:1.10.580.10	MapMan:5.7.3.6.1	InterPro:Citrate_synth-like_lrg_a-sub	InterPro:Citrate_synth-like_sm_a-sub	InterPro:Citrate_synthase
InterPro:Citrate_synthase_AS	InterPro:Citrate_synthase_bac-typ	InterPro:Citrate_synthase_sf	GO:GO:0003674	GO:GO:0003824	GO:GO:0006091
GO:GO:0006099	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016740	GO:GO:0046912
EnsemblPlantsGene:GSMUA_Achr10G14170_001	EnsemblPlants:GSMUA_Achr10P14170_001	EnsemblPlants:GSMUA_Achr10T14170_001	InterPro:IPR016142	InterPro:IPR016143	UniProt:M0RI43
PFAM:PF00285	PIRSF:PIRSF001369	ScanProsite:PS00480	PANTHER:PTHR11739	PANTHER:PTHR11739:SF4	SUPFAM:SSF48256
UniParc:UPI000296B86B	:	:	:	:	:

Description

Citrate synthase, glyoxysomal [Source:GMGC_GENE;Acc:GSMUA_Achr10G14170_001]

Coordinates

chr10:+:22525636..22530925

Molecular Weight (calculated)

52433.9 Da

IEP (calculated)

9.116

GRAVY (calculated)

-0.195

Length

476 amino acids

Sequence
(BLAST)

001: MESRSDPSAL ARGRLAVLSA HLAANRSFGG FSSVLERSPT LSQEDARPPG NLGGSLTVID ERTGKKYALP VSTEGTVKAT DLKKITAGKN DKGLKIYDPG
101: YLNTAPVRSS ICFIDGDEGI LRYRGYPIEE LAENSTFLEV AYLLMYGNLP TESQLADWEF AISQHSAVPQ GVLDIIQAMP HDAHPMGVLV SALSTLSVFH
201: PDANPALRGQ DLYHSKQVRD KQIVRVLGKV PTIAAAAYLR LAGRPPVLPS SNLSYSENFL YMLDSLGNRG VDVFTALAGA VGALYGPLHG GANEAVLKML
301: NEIGQVENIP EFIEGVKNRK RKLSGFGHRV YKNYDPRAKV IRKLAEEVFS IVGRDPLIEV AVALEKAALS DDYFIKRKLY PNVDFYSGLI YRAVGFPTEF
401: FPVLFAIPRM AGYLAHWRES LDDPDTKIMR PQQVYTGEWF RHYTPVRERM VSETTDKLGQ VGVSNASRRR LAGSQV

Best Arabidopsis Sequence Match ( AT2G42790.1 )
(BLAST)

001: MEISERVRAR LAVLSGHLSE GKQDSPAIER WCTSADTSVA PLGSLKGTLT IVDERTGKNY KVPVSDDGTV KAVDFKKIVT GKEDKGLKLY DPGYLNTAPV
101: RSSISYIDGD EGILRYRGYP IEEMAENSTF LEVAYLLMYG NLPSESQLSD WEFAVSQHSA VPQGVLDIIQ SMPHDAHPMG VLVSAMSALS IFHPDANPAL
201: RGQDIYDSKQ VRDKQIIRII GKAPTIAAAA YLRMAGRPPV LPSGNLPYAD NFLYMLDSLG NRSYKPNPRL ARVLDILFIL HAEHEMNCST AAARHLASSG
301: VDVYTAVAGA VGALYGPLHG GANEAVLKML SEIGTVENIP EFIEGVKNRK RKMSGFGHRV YKNYDPRAKV IKNLADEVFS IVGKDPLIEV AVALEKAALS
401: DDYFVKRKLY PNVDFYSGLI YRAMGFPPEF FTVLFAIPRM AGYLSHWKES LDDPDTKIMR PQQVYTGVWL RHYTPVRERI VTDDSKESDK LGQVATSNAS
501: RRRLAGSSV

Arabidopsis Description

CSY3Citrate synthase [Source:UniProtKB/TrEMBL;Acc:Q0WUX6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.