Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- vacuole 1
- mitochondrion 3
- cytosol 2
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT5G55190.1 | Thale cress | cytosol | 69.03 | 70.59 |
| VIT_04s0008g05020.t01 | Wine grape | cytosol | 69.03 | 70.59 |
| Bra035562.1-P | Field mustard | cytosol, nucleus, plastid | 68.58 | 70.14 |
| KRH61811 | Soybean | cytosol | 68.58 | 70.14 |
| KRH61808 | Soybean | nucleus | 68.58 | 70.14 |
| KRH52484 | Soybean | cytosol | 68.58 | 70.14 |
| KRH52483 | Soybean | nucleus | 68.58 | 70.14 |
| KRH52485 | Soybean | cytosol | 68.14 | 69.68 |
| Zm00001d044054_P002 | Maize | cytosol | 67.7 | 69.23 |
| Bra002926.1-P | Field mustard | cytosol, nucleus, plastid | 67.7 | 69.23 |
| CDY19907 | Canola | cytosol | 68.58 | 69.2 |
| Zm00001d011474_P001 | Maize | cytosol, plastid | 67.26 | 68.78 |
| KXG32999 | Sorghum | cytosol | 67.26 | 68.78 |
| HORVU0Hr1G030130.1 | Barley | cytosol | 65.93 | 68.66 |
| Os01t0611100-01 | Rice | plastid | 66.81 | 68.33 |
| Solyc01g104700.2.1 | Tomato | cytosol, nucleus | 66.81 | 68.33 |
| Solyc01g104680.2.1 | Tomato | cytosol | 66.81 | 68.33 |
| Solyc05g023800.2.1 | Tomato | nucleus | 66.37 | 67.87 |
| PGSC0003DMT400076528 | Potato | cytosol | 66.37 | 67.87 |
| PGSC0003DMT400016576 | Potato | cytosol | 66.37 | 67.87 |
| EES01060 | Sorghum | cytosol | 65.04 | 66.82 |
| GSMUA_Achr5P09850_001 | Banana | plasma membrane | 71.24 | 65.45 |
| TraesCS7B01G254000.2 | Wheat | cytosol | 63.72 | 64.57 |
| Zm00001d039091_P002 | Maize | cytosol | 67.26 | 64.41 |
| Zm00001d011328_P001 | Maize | cytosol | 36.73 | 63.85 |
| CDY06600 | Canola | cytosol | 69.03 | 62.9 |
| GSMUA_Achr1P11790_001 | Banana | cytosol, golgi | 71.24 | 62.4 |
| CDY20779 | Canola | vacuole | 69.47 | 61.81 |
| GSMUA_Achr6P01500_001 | Banana | vacuole | 68.58 | 61.51 |
| VIT_11s0016g04780.t01 | Wine grape | plastid | 70.35 | 61.15 |
| GSMUA_Achr4P00780_001 | Banana | mitochondrion | 71.24 | 60.98 |
| CDY17309 | Canola | plastid | 69.47 | 60.62 |
| Zm00001d039090_P001 | Maize | cytosol | 67.26 | 60.08 |
| GSMUA_Achr5P06130_001 | Banana | cytosol | 67.7 | 58.4 |
| GSMUA_Achr1P05300_001 | Banana | mitochondrion | 70.8 | 57.35 |
| GSMUA_Achr1P14580_001 | Banana | cytosol | 70.8 | 56.34 |
| KXG22580 | Sorghum | cytosol, nucleus | 23.45 | 55.79 |
| KRH61809 | Soybean | nucleus | 69.03 | 53.79 |
| VIT_18s0001g11670.t01 | Wine grape | endoplasmic reticulum, extracellular | 38.05 | 52.76 |
| GSMUA_Achr6P01550_001 | Banana | nucleus | 69.91 | 33.19 |
| TraesCS7D01G155200.2 | Wheat | plastid | 18.58 | 21.32 |
Protein Annotations
| MapMan:23.5.1.4 | Gene3D:3.40.50.300 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0003924 |
| GO:GO:0005488 | GO:GO:0005525 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005794 | GO:GO:0006810 | GO:GO:0006913 | GO:GO:0008150 | GO:GO:0009506 | GO:GO:0016787 |
| EnsemblPlantsGene:GSMUA_AchrUn_randomG07030_001 | EnsemblPlants:GSMUA_AchrUn_randomP07030_001 | EnsemblPlants:GSMUA_AchrUn_randomT07030_001 | InterPro:IPR002041 | UniProt:M0U714 | InterPro:P-loop_NTPase |
| PFAM:PF00071 | PRINTS:PR00449 | PFscan:PS51418 | PANTHER:PTHR24071 | PANTHER:PTHR24071:SF7 | InterPro:Ran_GTPase |
| SMART:SM00173 | SMART:SM00174 | SMART:SM00175 | SMART:SM00176 | SUPFAM:SSF52540 | InterPro:Small_GTP-bd_dom |
| InterPro:Small_GTPase | TIGRFAMs:TIGR00231 | TMHMM:TMhelix | UniParc:UPI000295425F | SEG:seg | : |
Description
GTP-binding nuclear protein Ran-A1 [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG07030_001]
Coordinates
chrchrUn_random:-:30604876..30613971
Molecular Weight (calculated)
25314.1 Da
IEP (calculated)
6.276
GRAVY (calculated)
-0.103
Length
226 amino acids
Sequence
(BLAST)
(BLAST)
001: MLLAQTTRVE ERFTRHHTAV GLGIFLISAA SLKLVLVGDG GTGKTTFVKR HLTATIGVEV HPLDFFTKCG KIRFYCWDTA GQEKFGGLHD GYHIHGQCAI
101: IVFDVTARLT YENVPTWHRD LCRFYENIPI VLCGNKVDIS AKSNYNFEKS FLYLARKLAG DPSLHFVESS ALAPPELQID LAAQQTDNVN HRTYSIHIFF
201: RREAELAAAA AQPLPDDDDD VDDVFD
101: IVFDVTARLT YENVPTWHRD LCRFYENIPI VLCGNKVDIS AKSNYNFEKS FLYLARKLAG DPSLHFVESS ALAPPELQID LAAQQTDNVN HRTYSIHIFF
201: RREAELAAAA AQPLPDDDDD VDDVFD
001: MALPNQQTVD YPSFKLVIVG DGGTGKTTFV KRHLTGEFEK KYEPTIGVEV HPLDFFTNCG KIRFYCWDTA GQEKFGGLRD GYYIHGQCAI IMFDVTARLT
101: YKNVPTWHRD LCRVCENIPI VLCGNKVDVK NRQVKAKQVT FHRKKNLQYY EISAKSNYNF EKPFLYLARK LAGDQNLHFV ETPALAPPEV HIDIADQQKN
201: EAELLQAAAQ PLPDDDDDIF E
101: YKNVPTWHRD LCRVCENIPI VLCGNKVDVK NRQVKAKQVT FHRKKNLQYY EISAKSNYNF EKPFLYLARK LAGDQNLHFV ETPALAPPEV HIDIADQQKN
201: EAELLQAAAQ PLPDDDDDIF E
Arabidopsis Description
RAN1GTP-binding nuclear protein [Source:UniProtKB/TrEMBL;Acc:A0A178UC18]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.