Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_AchrUn_... |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G07140.1 | GSMUA_AchrUn_... | AT5G55190.1 | 21798944 |
| AT1G07140.1 | GSMUA_AchrUn_... | AT5G55190.1 | 9025305 |
| AT2G30060.1 | GSMUA_AchrUn_... | AT5G55190.1 | 9025305 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr11P... | Banana | cytosol | 78.87 | 81.16 |
| GSMUA_Achr7P22420_001 | Banana | cytosol | 77.46 | 80.49 |
| GSMUA_Achr10P... | Banana | cytosol | 75.12 | 75.83 |
| Os03t0292800-01 | Rice | plastid | 66.67 | 67.94 |
| GSMUA_Achr9P04480_001 | Banana | cytosol | 70.42 | 67.87 |
| TraesCS4B01G193600.1 | Wheat | cytosol | 65.73 | 67.63 |
| TraesCS4A01G110400.1 | Wheat | cytosol | 65.26 | 67.15 |
| TraesCS4D01G194600.1 | Wheat | cytosol | 64.32 | 66.5 |
| CDX86501 | Canola | cytosol | 13.15 | 65.12 |
| EER92413 | Sorghum | cytosol | 63.85 | 65.07 |
| VIT_04s0008g01410.t01 | Wine grape | cytosol | 61.97 | 60.0 |
| Zm00001d028755_P001 | Maize | cytosol | 62.91 | 59.56 |
| Zm00001d047727_P002 | Maize | cytosol | 62.91 | 59.29 |
| CDY24034 | Canola | cytosol | 59.15 | 58.6 |
| Solyc08g062660.2.1 | Tomato | nucleus, plastid | 61.5 | 58.48 |
| PGSC0003DMT400021160 | Potato | cytosol | 61.5 | 58.48 |
| CDY09935 | Canola | cytosol | 61.5 | 58.22 |
| CDY06679 | Canola | cytosol | 60.09 | 58.18 |
| Bra015554.1-P | Field mustard | cytosol | 60.09 | 58.18 |
| CDY59068 | Canola | cytosol | 61.03 | 57.78 |
| CDY15604 | Canola | cytosol | 60.09 | 57.14 |
| Bra030675.1-P | Field mustard | cytosol | 60.09 | 57.14 |
| AT2G30060.1 | Thale cress | cytosol | 58.22 | 57.14 |
| CDX86496 | Canola | cytosol | 60.09 | 57.14 |
| Bra022775.1-P | Field mustard | cytosol | 59.15 | 57.01 |
| KRH75945 | Soybean | cytosol | 61.03 | 56.77 |
| AT5G58590.1 | Thale cress | cytosol | 58.22 | 56.62 |
| Bra031555.1-P | Field mustard | cytosol | 60.56 | 56.58 |
| CDX84862 | Canola | cytosol | 58.69 | 56.56 |
| KRH65697 | Soybean | cytosol | 52.58 | 56.28 |
| KRH35051 | Soybean | endoplasmic reticulum | 57.28 | 55.96 |
| KRG91719 | Soybean | endoplasmic reticulum | 57.75 | 55.16 |
| AT1G07140.1 | Thale cress | cytosol | 58.22 | 54.39 |
| HORVU4Hr1G056140.3 | Barley | plastid | 65.73 | 50.72 |
| CDX80354 | Canola | cytosol | 19.25 | 46.07 |
| CDY10250 | Canola | plastid | 51.64 | 44.72 |
Protein Annotations
| Gene3D:2.30.29.30 | MapMan:23.5.1.6 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0006810 |
| GO:GO:0008150 | GO:GO:0046907 | EnsemblPlantsGene:GSMUA_Achr11G19670_001 | EnsemblPlants:GSMUA_Achr11P19670_001 | EnsemblPlants:GSMUA_Achr11T19670_001 | InterPro:IPR000156 |
| InterPro:IPR011993 | UniProt:M0RTP7 | PFAM:PF00638 | InterPro:PH-like_dom_sf | PFscan:PS50196 | PANTHER:PTHR23138 |
| PANTHER:PTHR23138:SF107 | InterPro:Ran_bind_dom | SMART:SM00160 | SUPFAM:SSF50729 | UniParc:UPI0002965502 | SEG:seg |
Description
Ran-binding protein 1 homolog c [Source:GMGC_GENE;Acc:GSMUA_Achr11G19670_001]
Coordinates
chr11:+:20734919..20738359
Molecular Weight (calculated)
23245.1 Da
IEP (calculated)
4.527
GRAVY (calculated)
-0.592
Length
213 amino acids
Sequence
(BLAST)
(BLAST)
001: MASNDPDREE DAAEATAAGE DEDTGAQIAP IVTLSEVAVT TGEEEEHVLL DLKAKLYRFD KEGNQWKERG TGNVKLLKHI ETGKVRLVMR QAKTLKICAN
101: HLVLPSIKIQ EHAGNDKSCV WHAADFADGE LKEEMFCIRF GSVENCKKFI EMVEDITESA GKHVEKESKD ASDAAGLLGK LSVDESKTDE AAGPPANAYV
201: KAEDEKSEAE TKA
101: HLVLPSIKIQ EHAGNDKSCV WHAADFADGE LKEEMFCIRF GSVENCKKFI EMVEDITESA GKHVEKESKD ASDAAGLLGK LSVDESKTDE AAGPPANAYV
201: KAEDEKSEAE TKA
001: MASTEPEREN REDETEVNED EDTGAQVAPI VRLEEVAVTT GEEDEDAVLD LKSKMYRFDK EGNQWKERGA GTVKLLKHKE TGKVRLVMRQ SKTLKICANH
101: LISSGMSVQE HSGNEKSCLW HATDFSDGEL KDELFCIRFA SIENCKTFME KFTEIAESQQ VGKESTQGDE AAGLIENLSV EENISEEKAK EAEEKEPAKE
201: DKETKKEKVE EEKKTEAST
101: LISSGMSVQE HSGNEKSCLW HATDFSDGEL KDELFCIRFA SIENCKTFME KFTEIAESQQ VGKESTQGDE AAGLIENLSV EENISEEKAK EAEEKEPAKE
201: DKETKKEKVE EEKKTEAST
Arabidopsis Description
RANBP1CAt5g58590 [Source:UniProtKB/TrEMBL;Acc:Q1WWI2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.