Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plastid:
27992503
|
msms PMID:
27992503
doi
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os01t0611100-01 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER92413 | Sorghum | cytosol | 86.12 | 86.12 |
| TraesCS4A01G110400.1 | Wheat | cytosol | 79.43 | 80.19 |
| TraesCS4B01G193600.1 | Wheat | cytosol | 78.95 | 79.71 |
| TraesCS4D01G194600.1 | Wheat | cytosol | 77.99 | 79.13 |
| Zm00001d028755_P001 | Maize | cytosol | 84.69 | 78.67 |
| Zm00001d047727_P002 | Maize | cytosol | 83.73 | 77.43 |
| GSMUA_Achr11P... | Banana | cytosol | 70.33 | 71.01 |
| Os05t0350600-01 | Rice | cytosol, plasma membrane, plastid | 74.64 | 70.91 |
| GSMUA_Achr7P22420_001 | Banana | cytosol | 68.9 | 70.24 |
| GSMUA_Achr11P... | Banana | cytosol | 67.94 | 66.67 |
| GSMUA_Achr10P... | Banana | cytosol | 65.55 | 64.93 |
| VIT_04s0008g01410.t01 | Wine grape | cytosol | 66.03 | 62.73 |
| Solyc08g062660.2.1 | Tomato | nucleus, plastid | 65.55 | 61.16 |
| PGSC0003DMT400021160 | Potato | cytosol | 65.55 | 61.16 |
| HORVU4Hr1G056140.3 | Barley | plastid | 79.9 | 60.51 |
| CDX86501 | Canola | cytosol | 12.44 | 60.47 |
| KRH35051 | Soybean | endoplasmic reticulum | 62.68 | 60.09 |
| CDX84862 | Canola | cytosol | 62.2 | 58.82 |
| KRG91719 | Soybean | endoplasmic reticulum | 62.68 | 58.74 |
| Bra022775.1-P | Field mustard | cytosol | 61.72 | 58.37 |
| CDY06679 | Canola | cytosol | 61.24 | 58.18 |
| Bra015554.1-P | Field mustard | cytosol | 61.24 | 58.18 |
| CDY24034 | Canola | cytosol | 59.81 | 58.14 |
| CDY15604 | Canola | cytosol | 62.2 | 58.04 |
| CDX86496 | Canola | cytosol | 62.2 | 58.04 |
| Bra030675.1-P | Field mustard | cytosol | 62.2 | 58.04 |
| CDY09935 | Canola | cytosol | 62.2 | 57.78 |
| AT5G58590.1 | Thale cress | cytosol | 60.29 | 57.53 |
| CDY59068 | Canola | cytosol | 61.72 | 57.33 |
| AT2G30060.1 | Thale cress | cytosol | 59.33 | 57.14 |
| Bra031555.1-P | Field mustard | cytosol | 62.2 | 57.02 |
| KRH65697 | Soybean | cytosol | 54.07 | 56.78 |
| AT1G07140.1 | Thale cress | cytosol | 61.72 | 56.58 |
| KRH75945 | Soybean | cytosol | 60.29 | 55.02 |
| CDX80354 | Canola | cytosol | 20.57 | 48.31 |
| CDY10250 | Canola | plastid | 53.59 | 45.53 |
Protein Annotations
| Gene3D:2.30.29.30 | MapMan:23.5.1.6 | EntrezGene:4332513 | ProteinID:ABF95406.1 | EMBL:AK069970 | ProteinID:BAF11720.1 |
| ProteinID:BAS83683.1 | ncoils:Coil | ProteinID:EEE58861.1 | GO:GO:0000082 | GO:GO:0003674 | GO:GO:0005096 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005737 | GO:GO:0006405 | GO:GO:0006511 | GO:GO:0006606 | GO:GO:0006810 | GO:GO:0007049 |
| GO:GO:0007051 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008536 | GO:GO:0009056 | GO:GO:0009987 |
| GO:GO:0016043 | GO:GO:0019538 | GO:GO:0030234 | GO:GO:0043547 | GO:GO:0046907 | InterPro:IPR000156 |
| InterPro:IPR011993 | EnsemblPlantsGene:Os03g0292800 | EnsemblPlants:Os03t0292800-01 | PFAM:PF00638 | InterPro:PH-like_dom_sf | PFscan:PS50196 |
| PANTHER:PTHR23138 | PANTHER:PTHR23138:SF105 | UniProt:Q10MW8 | InterPro:Ran_bind_dom | SMART:SM00160 | SUPFAM:SSF50729 |
| UniParc:UPI0000DB45BF | RefSeq:XP_015627830.1 | SEG:seg | : | : | : |
Description
Similar to Ran binding protein 1 homolog. (Os03t0292800-01)
Coordinates
chr3:-:10187429..10190243
Molecular Weight (calculated)
23430.3 Da
IEP (calculated)
4.456
GRAVY (calculated)
-0.921
Length
209 amino acids
Sequence
(BLAST)
(BLAST)
001: MADPAEHREE EEEAAAAAAG EDEDTGAQVA PIVKLEEVAV TTGEEDEEVL LDMKSKLYRF DKEGNQWKER GTGTVKLLKH KETGKVRLVM RQAKTLKICA
101: NHLVATTTKM QEHAGSDKSC VWHALDFADG ELKEEMFAIR FGSVENCKKF REMVEEIAEQ QGKNEEKENE EVSSTAGLVE KLSVTETKKE ENAEKEETPA
201: EEDKKDAKE
101: NHLVATTTKM QEHAGSDKSC VWHALDFADG ELKEEMFAIR FGSVENCKKF REMVEEIAEQ QGKNEEKENE EVSSTAGLVE KLSVTETKKE ENAEKEETPA
201: EEDKKDAKE
001: MASTEPEREN REDETEVNED EDTGAQVAPI VRLEEVAVTT GEEDEDAVLD LKSKMYRFDK EGNQWKERGA GTVKLLKHKE TGKVRLVMRQ SKTLKICANH
101: LISSGMSVQE HSGNEKSCLW HATDFSDGEL KDELFCIRFA SIENCKTFME KFTEIAESQQ VGKESTQGDE AAGLIENLSV EENISEEKAK EAEEKEPAKE
201: DKETKKEKVE EEKKTEAST
101: LISSGMSVQE HSGNEKSCLW HATDFSDGEL KDELFCIRFA SIENCKTFME KFTEIAESQQ VGKESTQGDE AAGLIENLSV EENISEEKAK EAEEKEPAKE
201: DKETKKEKVE EEKKTEAST
Arabidopsis Description
RANBP1CAt5g58590 [Source:UniProtKB/TrEMBL;Acc:Q1WWI2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.